Mercurial > repos > siyuan > prada
comparison pyPRADA_1.2/tools/samtools-0.1.16/errmod.h @ 0:acc2ca1a3ba4
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| author | siyuan |
|---|---|
| date | Thu, 20 Feb 2014 00:44:58 -0500 |
| parents | |
| children |
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| -1:000000000000 | 0:acc2ca1a3ba4 |
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| 1 #ifndef ERRMOD_H | |
| 2 #define ERRMOD_H | |
| 3 | |
| 4 #include <stdint.h> | |
| 5 | |
| 6 struct __errmod_coef_t; | |
| 7 | |
| 8 typedef struct { | |
| 9 double depcorr; | |
| 10 struct __errmod_coef_t *coef; | |
| 11 } errmod_t; | |
| 12 | |
| 13 errmod_t *errmod_init(float depcorr); | |
| 14 void errmod_destroy(errmod_t *em); | |
| 15 | |
| 16 /* | |
| 17 n: number of bases | |
| 18 m: maximum base | |
| 19 bases[i]: qual:6, strand:1, base:4 | |
| 20 q[i*m+j]: phred-scaled likelihood of (i,j) | |
| 21 */ | |
| 22 int errmod_cal(const errmod_t *em, int n, int m, uint16_t *bases, float *q); | |
| 23 | |
| 24 #endif |