Mercurial > repos > siyuan > prada
comparison pyPRADA_1.2/tools/samtools-0.1.16/errmod.h @ 0:acc2ca1a3ba4
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author | siyuan |
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date | Thu, 20 Feb 2014 00:44:58 -0500 |
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-1:000000000000 | 0:acc2ca1a3ba4 |
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1 #ifndef ERRMOD_H | |
2 #define ERRMOD_H | |
3 | |
4 #include <stdint.h> | |
5 | |
6 struct __errmod_coef_t; | |
7 | |
8 typedef struct { | |
9 double depcorr; | |
10 struct __errmod_coef_t *coef; | |
11 } errmod_t; | |
12 | |
13 errmod_t *errmod_init(float depcorr); | |
14 void errmod_destroy(errmod_t *em); | |
15 | |
16 /* | |
17 n: number of bases | |
18 m: maximum base | |
19 bases[i]: qual:6, strand:1, base:4 | |
20 q[i*m+j]: phred-scaled likelihood of (i,j) | |
21 */ | |
22 int errmod_cal(const errmod_t *em, int n, int m, uint16_t *bases, float *q); | |
23 | |
24 #endif |