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comparison pyPRADA_1.2/tools/samtools-0.1.16/misc/Makefile @ 0:acc2ca1a3ba4

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author siyuan
date Thu, 20 Feb 2014 00:44:58 -0500
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-1:000000000000 0:acc2ca1a3ba4
1 CC= gcc
2 CXX= g++
3 CFLAGS= -g -Wall -O2 #-m64 #-arch ppc
4 CXXFLAGS= $(CFLAGS)
5 DFLAGS= -D_FILE_OFFSET_BITS=64
6 OBJS=
7 PROG= md5sum-lite md5fa maq2sam-short maq2sam-long wgsim
8 INCLUDES= -I..
9 SUBDIRS= .
10
11 .SUFFIXES:.c .o
12
13 .c.o:
14 $(CC) -c $(CFLAGS) $(DFLAGS) $(INCLUDES) $< -o $@
15
16 all:$(PROG)
17
18 lib-recur all-recur clean-recur cleanlocal-recur install-recur:
19 @target=`echo $@ | sed s/-recur//`; \
20 wdir=`pwd`; \
21 list='$(SUBDIRS)'; for subdir in $$list; do \
22 cd $$subdir; \
23 $(MAKE) CC="$(CC)" DFLAGS="$(DFLAGS)" CFLAGS="$(CFLAGS)" \
24 INCLUDES="$(INCLUDES)" $$target || exit 1; \
25 cd $$wdir; \
26 done;
27
28 lib:
29
30 afs2:afs2.o
31 $(CC) $(CFLAGS) -o $@ afs2.o -lm -lz -L.. -lbam
32
33 wgsim:wgsim.o
34 $(CC) $(CFLAGS) -o $@ wgsim.o -lm
35
36 md5fa:md5.o md5fa.o md5.h ../kseq.h
37 $(CC) $(CFLAGS) -o $@ md5.o md5fa.o -lz
38
39 md5sum-lite:md5sum-lite.o
40 $(CC) $(CFLAGS) -o $@ md5sum-lite.o
41
42 md5sum-lite.o:md5.c md5.h
43 $(CC) -c $(CFLAGS) -DMD5SUM_MAIN -o $@ md5.c
44
45 maq2sam-short:maq2sam.c
46 $(CC) $(CFLAGS) -o $@ maq2sam.c -lz
47
48 maq2sam-long:maq2sam.c
49 $(CC) $(CFLAGS) -DMAQ_LONGREADS -o $@ maq2sam.c -lz
50
51 md5fa.o:md5.h md5fa.c
52 $(CC) $(CFLAGS) -c -I.. -o $@ md5fa.c
53
54 afs2.o:afs2.c ../bam.h
55 $(CC) $(CFLAGS) -c -I.. -o $@ afs2.c
56
57 cleanlocal:
58 rm -fr gmon.out *.o a.out *.exe *.dSYM $(PROG) *~ *.a
59
60 clean:cleanlocal-recur