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author siyuan
date Thu, 20 Feb 2014 00:44:58 -0500
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Simply type `make' to compile and copy the resulting executable `bwa'
anywhere you want. You may also like to copy `solid2fastq.pl' and
`qualfa2fq.pl' for format conversion.

On 32-bit system, you should compile bwa with `make CFLAGS=-O2'.

The GNU building system is also supported, which is necessary for
building Java binding. Nonetheless, directly runing `make' is
recommended in most other cases.