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comparison piq.xml @ 6:8dca27fe444a draft

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author sjung
date Wed, 24 May 2017 00:36:30 -0400
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5:f77a3f2876c3 6:8dca27fe444a
1 <tool id="piq" name="piq" version="PIQ: 1.3">
2 <description> identify TFBSs at corresponding motifs from DNase-Seq experiments </description>
3 <requirements>
4 <requirement type="package">pymodules</requirement>
5 <requirement type="package" version="3.3.3">R</requirement>
6 <requirement type="package">piq</requirement>
7 </requirements>
8 <command interpreter="python">
9 piq_wrapper.py
10 --input $input
11 --out-dir $output.extra_files_path
12 --output $output
13 </command>
14 <inputs>
15 <param format="bam" help="" name="input" optional="false" type="data"/>
16 </inputs>
17 <outputs>
18 <data format="csv" label="${tool.name} on ${on_string}" name="output"/>
19 </outputs>
20 <help>
21 </help>
22 </tool>