# HG changeset patch
# User sjung
# Date 1495600555 14400
# Node ID 20bbc86eae21a8d73e8daca72c7766b5153ccf61
# Parent  43e4ba4796c10a0c605fbe926cd3b21c9229d9e1
Uploaded

diff -r 43e4ba4796c1 -r 20bbc86eae21 hint.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/hint.xml	Wed May 24 00:35:55 2017 -0400
@@ -0,0 +1,22 @@
+<tool id="hint" name="Hint" version="HINT: 1.1.1">
+    <description> predicts TFBSs given open chromatin data </description>
+    <requirements>
+      <requirement type="package">pymodules</requirement>
+    </requirements>
+    <command interpreter="python">
+      hint_wrapper.py
+      --input $input
+      --region $region
+      --out-dir $output.extra_files_path
+      --output $output
+    </command>
+      <inputs>
+         <param format="bam" help="" name="input" optional="false" type="data" label="Input BAM"/>
+         <param format="bed" help="" name="region" optional="false" type="data" label="Input BED"/>
+      </inputs>
+      <outputs>
+         <data format="bed" label="${tool.name} on ${on_string}" name="output"/>
+      </outputs>
+      <help>
+      </help>
+</tool>