# HG changeset patch
# User sjung
# Date 1495600590 14400
# Node ID 8dca27fe444abd3b7fc84ce9fcf975769242035c
# Parent  f77a3f2876c3c21abf2c6b63f75f0be58e7e5995
Uploaded

diff -r f77a3f2876c3 -r 8dca27fe444a piq.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/piq.xml	Wed May 24 00:36:30 2017 -0400
@@ -0,0 +1,22 @@
+<tool id="piq" name="piq" version="PIQ: 1.3">
+    <description> identify TFBSs at corresponding motifs from DNase-Seq experiments </description>
+    <requirements>
+      <requirement type="package">pymodules</requirement>
+      <requirement type="package" version="3.3.3">R</requirement>
+      <requirement type="package">piq</requirement>
+    </requirements>
+    <command interpreter="python">
+      piq_wrapper.py
+      --input $input
+      --out-dir $output.extra_files_path
+      --output $output
+    </command>
+      <inputs>
+         <param format="bam" help="" name="input" optional="false" type="data"/>
+      </inputs>
+      <outputs>
+         <data format="csv" label="${tool.name} on ${on_string}" name="output"/>
+      </outputs>
+      <help>
+      </help>
+</tool>