Mercurial > repos > spficklin > aurora_wgcna

comparison aurora_wgcna.Rmd @ 4:b14e4bf568b0 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author spficklin
date Mon, 25 Nov 2019 12:17:08 -0500
parents 66ef158fa85c
children 96ba1a8fff06
comparison
equal deleted inserted replaced
3:d1a0b7ded7e3 4:b14e4bf568b0
334 TOMplot(plotDiss, selectTree, colors, main = paste('TOM Heatmap, Block', i)) 334 TOMplot(plotDiss, selectTree, colors, main = paste('TOM Heatmap, Block', i))
335 } 335 }
336 ``` 336 ```
337 337
338 ```{r} 338 ```{r}
339 output = cbind(colnames(gemt), module_labels) 339 module_colors = sub('ME','', module_labels)
340 colnames(output) = c('Gene', 'Module') 340 output = cbind(colnames(gemt), module_labels, module_colors)
341 colnames(output) = c('Gene', 'Module', 'Color')
341 write.csv(output, file = opt$gene_module_file, quote=FALSE, row.names=FALSE) 342 write.csv(output, file = opt$gene_module_file, quote=FALSE, row.names=FALSE)
342 ``` 343 ```
343 344
344 A file has been generated named `gene_module_file.csv` which contains the list of genes and the modules they belong to. 345 A file has been generated named `gene_module_file.csv` which contains the list of genes and the modules they belong to.
345 346