--- a/TF_ChIP-Seq_analysis_using_MACS2__hg19.ga	Tue Jul 19 14:44:20 2016 -0400
+++ b/TF_ChIP-Seq_analysis_using_MACS2__hg19.ga	Fri Jul 22 00:07:10 2016 -0400
@@ -6,6 +6,7 @@
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+                "name": "macs2", 
+                "owner": "iuc", 
+                "tool_shed": "toolshed.g2.bx.psu.edu"
+            }, 
+            "tool_state": "{\"__page__\": 0, \"__rerun_remap_job_id__\": null, \"infile_control\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"bdgcmp_options\": \"{\\\"bdgcmp_options_selector\\\": \\\"ppois\\\", \\\"__current_case__\\\": 3}\", \"infile_treatment\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\"}", 
             "tool_version": "2.1.0.20151222.0", 
             "type": "tool", 
-            "user_outputs": []
+            "uuid": "dcfd9cac-e8a2-4425-a8fc-1e398710d6ca", 
+            "workflow_outputs": []
         }, 
         "10": {
             "annotation": "{\"out_file1\": {\"name\": \"MACS2_bigwig\", \"description\": \"\", \"type\": \"bigwig\"}}", 
+            "content_id": "wig_to_bigWig", 
             "id": 10, 
             "input_connections": {
                 "input1": {
@@ -363,7 +490,13 @@
                     "output_name": "outfile"
                 }
             }, 
-            "inputs": [], 
+            "inputs": [
+                {
+                    "description": "runtime parameter for tool Wig/BedGraph-to-bigWig", 
+                    "name": "input1"
+                }
+            ], 
+            "label": null, 
             "name": "Wig/BedGraph-to-bigWig", 
             "outputs": [
                 {
@@ -378,10 +511,12 @@
             "post_job_actions": {}, 
             "tool_errors": null, 
             "tool_id": "wig_to_bigWig", 
-            "tool_state": "{\"__page__\": 0, \"__rerun_remap_job_id__\": null, \"input1\": \"null\", \"settings\": \"{\\\"settingsType\\\": \\\"preset\\\", \\\"__current_case__\\\": 0}\"}", 
+            "tool_state": "{\"__page__\": 0, \"__rerun_remap_job_id__\": null, \"input1\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"settings\": \"{\\\"settingsType\\\": \\\"preset\\\", \\\"__current_case__\\\": 0}\"}", 
             "tool_version": "1.1.0", 
             "type": "tool", 
-            "user_outputs": []
+            "uuid": "f5cf8c55-03d2-4fc0-b5fa-5f4be859b628", 
+            "workflow_outputs": []
         }
-    }
+    }, 
+    "uuid": "9d3dbd7d-2fd7-479f-a582-aa2d84a5d443"
 }
\ No newline at end of file