Mercurial > repos > stemcellcommons > deeptools_bamqc_workflow

annotate deepTools_BAM_QC.ga @ 0:897b11a77250 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
author scottx611x
date Tue, 04 Sep 2018 13:55:35 -0400
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
1 {
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
2 "a_galaxy_workflow": "true",
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
3 "annotation": "{ \n \"description\": \"Compare aligned samples via pairwise correlation heatmap and PCA plot\", \n \"file_relationship\": { \n \"file_relationship\": {}, \n \"value_type\": \"LIST\", \n \"name\": \"List of BAM Files\", \n \"input_files\": [ \n { \n \"allowed_filetypes\": [{\"name\": \"BAM\"}], \n \"name\": \"Input File\", \n \"description\": \"File to run deepTools BAM QC on\" \n } \n ] \n } \n}",
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
4 "format-version": "0.1",
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
5 "name": "deepTools BAM QC",
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
6 "steps": {
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
7 "0": {
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
8 "annotation": "",
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
9 "content_id": null,
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
10 "errors": null,
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
11 "id": 0,
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
12 "input_connections": {},
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
13 "inputs": [],
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
14 "label": null,
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
15 "name": "Input dataset collection",
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
16 "outputs": [],
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
17 "position": {
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
18 "left": 299.5,
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
19 "top": 287.5
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
20 },
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
21 "tool_id": null,
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
22 "tool_state": "{\"collection_type\": \"list\"}",
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
23 "tool_version": null,
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
24 "type": "data_collection_input",
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
25 "uuid": "7e26711f-78ba-4f74-90ea-b30acefcf685",
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
26 "workflow_outputs": [
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
27 {
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
28 "label": null,
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
29 "output_name": "output",
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
30 "uuid": "ef8c102b-e5a8-4a1e-9bbc-cf875cfcd72e"
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
31 }
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
32 ]
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
33 },
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
34 "1": {
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
35 "annotation": "",
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
36 "content_id": "toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_multi_bam_summary/deeptools_multi_bam_summary/2.2.3.0",
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
37 "errors": null,
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
38 "id": 1,
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
39 "input_connections": {
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
40 "bamfiles": {
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
41 "id": 0,
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
42 "output_name": "output"
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
43 }
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
44 },
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
45 "inputs": [
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
46 {
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
47 "description": "runtime parameter for tool multiBamSummary",
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
48 "name": "bamfiles"
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
49 }
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
50 ],
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
51 "label": null,
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
52 "name": "multiBamSummary",
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
53 "outputs": [
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
54 {
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
55 "name": "outFile",
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
56 "type": "deeptools_coverage_matrix"
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
57 },
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
58 {
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
59 "name": "outFileRawCounts",
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
60 "type": "tabular"
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
61 }
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
62 ],
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
63 "position": {
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
64 "left": 845.5,
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
65 "top": 356.5
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
66 },
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
67 "post_job_actions": {},
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
68 "tool_id": "toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_multi_bam_summary/deeptools_multi_bam_summary/2.2.3.0",
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
69 "tool_shed_repository": {
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
70 "changeset_revision": "87d2c75884d9",
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
71 "name": "deeptools_multi_bam_summary",
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
72 "owner": "bgruening",
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
73 "tool_shed": "toolshed.g2.bx.psu.edu"
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
74 },
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
75 "tool_state": "{\"__page__\": null, \"bamfiles\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"region\": \"\\\"\\\"\", \"mode\": \"{\\\"binSize\\\": \\\"10000\\\", \\\"distanceBetweenBins\\\": \\\"0\\\", \\\"__current_case__\\\": 0, \\\"modeOpt\\\": \\\"bins\\\"}\", \"advancedOpt\": \"{\\\"showAdvancedOpt\\\": \\\"no\\\", \\\"__current_case__\\\": 0}\", \"__rerun_remap_job_id__\": null, \"outRawCounts\": \"\\\"false\\\"\"}",
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
76 "tool_version": "2.2.3.0",
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
77 "type": "tool",
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
78 "uuid": "b199cca5-5101-4ad0-8f17-aa902c5ece8f",
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
79 "workflow_outputs": [
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
80 {
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
81 "label": null,
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
82 "output_name": "outFileRawCounts",
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
83 "uuid": "90b33467-e9cc-4c8a-8e96-f8c12c1a8daf"
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
84 },
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
85 {
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
86 "label": null,
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
87 "output_name": "outFile",
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
88 "uuid": "fe5ce046-edd4-4953-8b20-4ccabb4d6eb2"
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
89 }
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
90 ]
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
91 },
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
92 "2": {
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
93 "annotation": "",
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
94 "content_id": "toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_correlation/deeptools_plot_correlation/2.2.3.0",
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
95 "errors": null,
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
96 "id": 2,
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
97 "input_connections": {
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
98 "corData": {
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
99 "id": 1,
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
100 "output_name": "outFile"
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
101 }
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
102 },
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
103 "inputs": [
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
104 {
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
105 "description": "runtime parameter for tool plotCorrelation",
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
106 "name": "corData"
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
107 }
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
108 ],
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
109 "label": null,
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
110 "name": "plotCorrelation",
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
111 "outputs": [
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
112 {
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
113 "name": "outFileName",
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
114 "type": "png"
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
115 },
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
116 {
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
117 "name": "matrix",
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
118 "type": "tabular"
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
119 }
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
120 ],
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
121 "position": {
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
122 "left": 1225,
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
123 "top": 215.5
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
124 },
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
125 "post_job_actions": {},
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
126 "tool_id": "toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_correlation/deeptools_plot_correlation/2.2.3.0",
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
127 "tool_shed_repository": {
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
128 "changeset_revision": "b3589208f673",
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
129 "name": "deeptools_plot_correlation",
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
130 "owner": "bgruening",
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
131 "tool_shed": "toolshed.g2.bx.psu.edu"
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
132 },
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
133 "tool_state": "{\"__page__\": null, \"removeOutliers\": \"\\\"false\\\"\", \"outFileFormat\": \"\\\"svg\\\"\", \"outFileCorMatrix\": \"\\\"false\\\"\", \"__rerun_remap_job_id__\": null, \"corMethod\": \"\\\"spearman\\\"\", \"skipZeros\": \"\\\"false\\\"\", \"plotting_type\": \"{\\\"plotTitle\\\": \\\"\\\", \\\"colorMap\\\": \\\"RdYlBu\\\", \\\"plotNumbers\\\": \\\"false\\\", \\\"zMin\\\": \\\"\\\", \\\"whatToPlot\\\": \\\"heatmap\\\", \\\"__current_case__\\\": 0, \\\"zMax\\\": \\\"\\\"}\", \"corData\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\"}",
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
134 "tool_version": "2.2.3.0",
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
135 "type": "tool",
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
136 "uuid": "4cb57832-703a-4af2-a90c-e0ca2b1dafbe",
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
137 "workflow_outputs": [
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
138 {
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
139 "label": null,
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
140 "output_name": "outFileName",
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
141 "uuid": "04d6ff82-6f3c-4bb8-8449-5c212a152aa3"
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
142 },
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
143 {
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
144 "label": null,
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
145 "output_name": "matrix",
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
146 "uuid": "94a22779-d526-4fb0-aae1-ad8c36cb6ffc"
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
147 }
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
148 ]
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
149 },
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
150 "3": {
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
151 "annotation": "",
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
152 "content_id": "toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_pca/deeptools_plot_pca/2.2.3.0",
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
153 "errors": null,
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
154 "id": 3,
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
155 "input_connections": {
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
156 "corData": {
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
157 "id": 1,
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
158 "output_name": "outFile"
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
159 }
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
160 },
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
161 "inputs": [
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
162 {
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
163 "description": "runtime parameter for tool plotPCA",
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
164 "name": "corData"
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
165 }
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
166 ],
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
167 "label": null,
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
168 "name": "plotPCA",
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
169 "outputs": [
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
170 {
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
171 "name": "outFileName",
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
172 "type": "png"
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
173 },
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
174 {
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
175 "name": "output_outFileNameData",
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
176 "type": "tabular"
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
177 }
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
178 ],
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
179 "position": {
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
180 "left": 1232,
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
181 "top": 520.5
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
182 },
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
183 "post_job_actions": {},
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
184 "tool_id": "toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_pca/deeptools_plot_pca/2.2.3.0",
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
185 "tool_shed_repository": {
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
186 "changeset_revision": "610bbc25ed8b",
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
187 "name": "deeptools_plot_pca",
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
188 "owner": "bgruening",
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
189 "tool_shed": "toolshed.g2.bx.psu.edu"
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
190 },
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
191 "tool_state": "{\"__page__\": null, \"plotTitle\": \"\\\"\\\"\", \"outFileFormat\": \"\\\"png\\\"\", \"__rerun_remap_job_id__\": null, \"outFileNameData\": \"\\\"false\\\"\", \"corData\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\"}",
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
192 "tool_version": "2.2.3.0",
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
193 "type": "tool",
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
194 "uuid": "4a7bf483-9e9e-4c4d-bd87-f4b3ddbaa83f",
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
195 "workflow_outputs": [
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
196 {
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
197 "label": null,
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
198 "output_name": "outFileName",
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
199 "uuid": "da87bbce-e727-417f-9fb3-60c46e5d0e6b"
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
200 },
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
201 {
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
202 "label": null,
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
203 "output_name": "output_outFileNameData",
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
204 "uuid": "37629b80-9917-4092-9446-79fe08e99a7e"
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
205 }
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
206 ]
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
207 }
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
208 },
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
209 "uuid": "46c45881-988d-4a31-808a-bc65ff8a212f"
897b11a77250 planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
scottx611x
parents:
diff changeset
210 }