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2
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1 {
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2 "a_galaxy_workflow": "true",
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5
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3 "annotation": "{\n \"description\": \"Check for any data quality issues before running analysis workflows.\",\n \"file_relationship\": {\n \"file_relationship\": {},\n \"value_type\": \"LIST\",\n \"name\": \"List of FASTQ Files\",\n \"input_files\": [\n {\n \"allowed_filetypes\": [{\"name\": \"FASTQ\"},{\"name\": \"BAM\"},{\"name\": \"SAM\"}],\n \"name\": \"Input File\",\n \"description\": \"File to run QC on\"\n }\n ]\n }\n}",
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2
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4 "format-version": "0.1",
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5 "name": "FastQC",
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6 "steps": {
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7 "0": {
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8 "annotation": "",
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5
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9 "content_id": null,
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10 "id": 0,
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11 "input_connections": {},
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12 "inputs": [
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13 {
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14 "description": "",
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15 "name": "Input Dataset"
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16 }
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17 ],
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18 "label": null,
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2
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19 "name": "Input dataset",
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20 "outputs": [],
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21 "position": {
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22 "left": 315,
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23 "top": 410
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24 },
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25 "tool_errors": null,
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26 "tool_id": null,
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27 "tool_state": "{\"name\": \"Input Dataset\"}",
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28 "tool_version": null,
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29 "type": "data_input",
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5
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30 "uuid": "983e8aa7-72ca-446a-95a4-dc5f645421ec",
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31 "workflow_outputs": [
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32 {
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33 "label": null,
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34 "output_name": "output",
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35 "uuid": "77b252a2-567b-4e1c-b5d1-41b8027ecca4"
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36 }
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37 ]
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2
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38 },
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39 "1": {
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40 "annotation": "{\"html_file\": {\"name\": \"fastqc_report\", \"description\": \"HTML file containing FASTQC report.\", \"type\": \"html\"}, \"text_file\": {\"name\": \"fastqc_results\", \"description\": \"Data file containing FASTQC results.\", \"type\": \"txt\"}}",
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41 "content_id": "toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.65",
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42 "id": 1,
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43 "input_connections": {
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44 "input_file": {
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45 "id": 0,
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46 "output_name": "output"
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47 }
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48 },
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49 "inputs": [],
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50 "label": null,
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51 "name": "FastQC",
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52 "outputs": [
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53 {
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54 "name": "html_file",
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55 "type": "html"
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56 },
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57 {
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58 "name": "text_file",
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59 "type": "txt"
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60 }
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61 ],
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62 "position": {
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63 "left": 599,
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64 "top": 351.5
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65 },
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66 "post_job_actions": {
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67 "RenameDatasetActionhtml_file": {
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68 "action_arguments": {
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69 "newname": "fastqc_report"
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70 },
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71 "action_type": "RenameDatasetAction",
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72 "output_name": "html_file"
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73 },
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74 "RenameDatasetActiontext_file": {
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75 "action_arguments": {
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76 "newname": "fastqc_results"
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77 },
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78 "action_type": "RenameDatasetAction",
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79 "output_name": "text_file"
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80 }
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81 },
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82 "tool_errors": null,
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83 "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.65",
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84 "tool_state": "{\"__page__\": 0, \"contaminants\": \"null\", \"__rerun_remap_job_id__\": null, \"limits\": \"null\", \"input_file\": \"null\"}",
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85 "tool_version": "0.65",
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86 "type": "tool",
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87 "uuid": "88cc0f74-d5ad-421b-9330-d3ff49c79bb0",
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88 "workflow_outputs": [
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89 {
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90 "label": null,
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91 "output_name": "html_file",
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92 "uuid": "91f9c648-5ddc-495f-b3dd-f043c9af0862"
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93 },
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94 {
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95 "label": null,
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96 "output_name": "text_file",
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97 "uuid": "dcbdf17b-0c13-4418-b255-1cf411312b74"
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98 }
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99 ]
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100 }
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101 },
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102 "uuid": "4f81b632-d3cd-460f-9b3c-62593b41dfab"
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2
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103 } |
