Mercurial > repos > stemcellcommons > fastqc_workflow
view FastQC.ga @ 5:c5784ddcda07 draft default tip
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author | stemcellcommons |
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date | Tue, 24 Oct 2017 12:39:37 -0400 |
parents | df2d7e8eacda |
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{ "a_galaxy_workflow": "true", "annotation": "{\n \"description\": \"Check for any data quality issues before running analysis workflows.\",\n \"file_relationship\": {\n \"file_relationship\": {},\n \"value_type\": \"LIST\",\n \"name\": \"List of FASTQ Files\",\n \"input_files\": [\n {\n \"allowed_filetypes\": [{\"name\": \"FASTQ\"},{\"name\": \"BAM\"},{\"name\": \"SAM\"}],\n \"name\": \"Input File\",\n \"description\": \"File to run QC on\"\n }\n ]\n }\n}", "format-version": "0.1", "name": "FastQC", "steps": { "0": { "annotation": "", "content_id": null, "id": 0, "input_connections": {}, "inputs": [ { "description": "", "name": "Input Dataset" } ], "label": null, "name": "Input dataset", "outputs": [], "position": { "left": 315, "top": 410 }, "tool_errors": null, "tool_id": null, "tool_state": "{\"name\": \"Input Dataset\"}", "tool_version": null, "type": "data_input", "uuid": "983e8aa7-72ca-446a-95a4-dc5f645421ec", "workflow_outputs": [ { "label": null, "output_name": "output", "uuid": "77b252a2-567b-4e1c-b5d1-41b8027ecca4" } ] }, "1": { "annotation": "{\"html_file\": {\"name\": \"fastqc_report\", \"description\": \"HTML file containing FASTQC report.\", \"type\": \"html\"}, \"text_file\": {\"name\": \"fastqc_results\", \"description\": \"Data file containing FASTQC results.\", \"type\": \"txt\"}}", "content_id": "toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.65", "id": 1, "input_connections": { "input_file": { "id": 0, "output_name": "output" } }, "inputs": [], "label": null, "name": "FastQC", "outputs": [ { "name": "html_file", "type": "html" }, { "name": "text_file", "type": "txt" } ], "position": { "left": 599, "top": 351.5 }, "post_job_actions": { "RenameDatasetActionhtml_file": { "action_arguments": { "newname": "fastqc_report" }, "action_type": "RenameDatasetAction", "output_name": "html_file" }, "RenameDatasetActiontext_file": { "action_arguments": { "newname": "fastqc_results" }, "action_type": "RenameDatasetAction", "output_name": "text_file" } }, "tool_errors": null, "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.65", "tool_state": "{\"__page__\": 0, \"contaminants\": \"null\", \"__rerun_remap_job_id__\": null, \"limits\": \"null\", \"input_file\": \"null\"}", "tool_version": "0.65", "type": "tool", "uuid": "88cc0f74-d5ad-421b-9330-d3ff49c79bb0", "workflow_outputs": [ { "label": null, "output_name": "html_file", "uuid": "91f9c648-5ddc-495f-b3dd-f043c9af0862" }, { "label": null, "output_name": "text_file", "uuid": "dcbdf17b-0c13-4418-b255-1cf411312b74" } ] } }, "uuid": "4f81b632-d3cd-460f-9b3c-62593b41dfab" }