# HG changeset patch
# User stemcellcommons
# Date 1508863177 14400
# Node ID c5784ddcda072f772e6ce4dedf7ae1dfe8b88697
# Parent  0a916a65890fde7992561263057cb2c768e1746a
Update annotations

diff -r 0a916a65890f -r c5784ddcda07 FastQC.ga
--- a/FastQC.ga	Tue Oct 24 12:31:56 2017 -0400
+++ b/FastQC.ga	Tue Oct 24 12:39:37 2017 -0400
@@ -1,11 +1,12 @@
 {
     "a_galaxy_workflow": "true", 
-    "annotation": "{\"refinery_type\": \"analysis\"}", 
+    "annotation": "{\n  \"description\": \"Check for any data quality issues before running analysis workflows.\",\n  \"file_relationship\": {\n    \"file_relationship\": {},\n    \"value_type\": \"LIST\",\n    \"name\": \"List of FASTQ Files\",\n    \"input_files\": [\n      {\n        \"allowed_filetypes\": [{\"name\": \"FASTQ\"},{\"name\": \"BAM\"},{\"name\": \"SAM\"}],\n        \"name\": \"Input File\",\n        \"description\": \"File to run QC on\"\n      }\n    ]\n  }\n}", 
     "format-version": "0.1", 
     "name": "FastQC", 
     "steps": {
         "0": {
             "annotation": "", 
+            "content_id": null, 
             "id": 0, 
             "input_connections": {}, 
             "inputs": [
@@ -14,21 +15,30 @@
                     "name": "Input Dataset"
                 }
             ], 
+            "label": null, 
             "name": "Input dataset", 
             "outputs": [], 
             "position": {
-                "left": 155, 
-                "top": 389
+                "left": 315, 
+                "top": 410
             }, 
             "tool_errors": null, 
             "tool_id": null, 
             "tool_state": "{\"name\": \"Input Dataset\"}", 
             "tool_version": null, 
             "type": "data_input", 
-            "user_outputs": []
+            "uuid": "983e8aa7-72ca-446a-95a4-dc5f645421ec", 
+            "workflow_outputs": [
+                {
+                    "label": null, 
+                    "output_name": "output", 
+                    "uuid": "77b252a2-567b-4e1c-b5d1-41b8027ecca4"
+                }
+            ]
         }, 
         "1": {
             "annotation": "{\"html_file\": {\"name\": \"fastqc_report\", \"description\": \"HTML file containing FASTQC report.\", \"type\": \"html\"}, \"text_file\": {\"name\": \"fastqc_results\", \"description\": \"Data file containing FASTQC results.\", \"type\": \"txt\"}}", 
+            "content_id": "toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.65", 
             "id": 1, 
             "input_connections": {
                 "input_file": {
@@ -37,6 +47,7 @@
                 }
             }, 
             "inputs": [], 
+            "label": null, 
             "name": "FastQC", 
             "outputs": [
                 {
@@ -49,16 +60,44 @@
                 }
             ], 
             "position": {
-                "left": 439, 
-                "top": 330.5
+                "left": 599, 
+                "top": 351.5
             }, 
-            "post_job_actions": {}, 
+            "post_job_actions": {
+                "RenameDatasetActionhtml_file": {
+                    "action_arguments": {
+                        "newname": "fastqc_report"
+                    }, 
+                    "action_type": "RenameDatasetAction", 
+                    "output_name": "html_file"
+                }, 
+                "RenameDatasetActiontext_file": {
+                    "action_arguments": {
+                        "newname": "fastqc_results"
+                    }, 
+                    "action_type": "RenameDatasetAction", 
+                    "output_name": "text_file"
+                }
+            }, 
             "tool_errors": null, 
             "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.65", 
             "tool_state": "{\"__page__\": 0, \"contaminants\": \"null\", \"__rerun_remap_job_id__\": null, \"limits\": \"null\", \"input_file\": \"null\"}", 
             "tool_version": "0.65", 
             "type": "tool", 
-            "user_outputs": []
+            "uuid": "88cc0f74-d5ad-421b-9330-d3ff49c79bb0", 
+            "workflow_outputs": [
+                {
+                    "label": null, 
+                    "output_name": "html_file", 
+                    "uuid": "91f9c648-5ddc-495f-b3dd-f043c9af0862"
+                }, 
+                {
+                    "label": null, 
+                    "output_name": "text_file", 
+                    "uuid": "dcbdf17b-0c13-4418-b255-1cf411312b74"
+                }
+            ]
         }
-    }
+    }, 
+    "uuid": "4f81b632-d3cd-460f-9b3c-62593b41dfab"
 }
\ No newline at end of file