Mercurial > repos > stemcellcommons > fastqc_workflow

changeset 2:df2d7e8eacda draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Shorten workflow file name
author stemcellcommons
date Thu, 28 Apr 2016 17:01:12 -0400
parents 2d805c407c01
children 00419b8091d1
files FastQC.ga Galaxy-Workflow-FastQC.ga repository_dependencies.xml
diffstat 3 files changed, 65 insertions(+), 65 deletions(-) [+]
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/FastQC.ga	Thu Apr 28 17:01:12 2016 -0400
@@ -0,0 +1,64 @@
+{
+    "a_galaxy_workflow": "true", 
+    "annotation": "{\"refinery_type\": \"analysis\"}", 
+    "format-version": "0.1", 
+    "name": "FastQC", 
+    "steps": {
+        "0": {
+            "annotation": "", 
+            "id": 0, 
+            "input_connections": {}, 
+            "inputs": [
+                {
+                    "description": "", 
+                    "name": "Input Dataset"
+                }
+            ], 
+            "name": "Input dataset", 
+            "outputs": [], 
+            "position": {
+                "left": 155, 
+                "top": 389
+            }, 
+            "tool_errors": null, 
+            "tool_id": null, 
+            "tool_state": "{\"name\": \"Input Dataset\"}", 
+            "tool_version": null, 
+            "type": "data_input", 
+            "user_outputs": []
+        }, 
+        "1": {
+            "annotation": "{\"html_file\": {\"name\": \"fastqc_report\", \"description\": \"HTML file containing FASTQC report.\", \"type\": \"html\"}, \"text_file\": {\"name\": \"fastqc_results\", \"description\": \"Data file containing FASTQC results.\", \"type\": \"txt\"}}", 
+            "id": 1, 
+            "input_connections": {
+                "input_file": {
+                    "id": 0, 
+                    "output_name": "output"
+                }
+            }, 
+            "inputs": [], 
+            "name": "FastQC", 
+            "outputs": [
+                {
+                    "name": "html_file", 
+                    "type": "html"
+                }, 
+                {
+                    "name": "text_file", 
+                    "type": "txt"
+                }
+            ], 
+            "position": {
+                "left": 439, 
+                "top": 330.5
+            }, 
+            "post_job_actions": {}, 
+            "tool_errors": null, 
+            "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.65", 
+            "tool_state": "{\"__page__\": 0, \"contaminants\": \"null\", \"__rerun_remap_job_id__\": null, \"limits\": \"null\", \"input_file\": \"null\"}", 
+            "tool_version": "0.65", 
+            "type": "tool", 
+            "user_outputs": []
+        }
+    }
+}
\ No newline at end of file
--- a/Galaxy-Workflow-FastQC.ga	Mon Apr 18 21:42:02 2016 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,64 +0,0 @@
-{
-    "a_galaxy_workflow": "true", 
-    "annotation": "{\"refinery_type\": \"analysis\"}", 
-    "format-version": "0.1", 
-    "name": "FastQC", 
-    "steps": {
-        "0": {
-            "annotation": "", 
-            "id": 0, 
-            "input_connections": {}, 
-            "inputs": [
-                {
-                    "description": "", 
-                    "name": "Input Dataset"
-                }
-            ], 
-            "name": "Input dataset", 
-            "outputs": [], 
-            "position": {
-                "left": 155, 
-                "top": 389
-            }, 
-            "tool_errors": null, 
-            "tool_id": null, 
-            "tool_state": "{\"name\": \"Input Dataset\"}", 
-            "tool_version": null, 
-            "type": "data_input", 
-            "user_outputs": []
-        }, 
-        "1": {
-            "annotation": "{\"html_file\": {\"name\": \"fastqc_report\", \"description\": \"HTML file containing FASTQC report.\", \"type\": \"html\"}, \"text_file\": {\"name\": \"fastqc_results\", \"description\": \"Data file containing FASTQC results.\", \"type\": \"txt\"}}", 
-            "id": 1, 
-            "input_connections": {
-                "input_file": {
-                    "id": 0, 
-                    "output_name": "output"
-                }
-            }, 
-            "inputs": [], 
-            "name": "FastQC", 
-            "outputs": [
-                {
-                    "name": "html_file", 
-                    "type": "html"
-                }, 
-                {
-                    "name": "text_file", 
-                    "type": "txt"
-                }
-            ], 
-            "position": {
-                "left": 439, 
-                "top": 330.5
-            }, 
-            "post_job_actions": {}, 
-            "tool_errors": null, 
-            "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.65", 
-            "tool_state": "{\"__page__\": 0, \"contaminants\": \"null\", \"__rerun_remap_job_id__\": null, \"limits\": \"null\", \"input_file\": \"null\"}", 
-            "tool_version": "0.65", 
-            "type": "tool", 
-            "user_outputs": []
-        }
-    }
-}
\ No newline at end of file
--- a/repository_dependencies.xml	Mon Apr 18 21:42:02 2016 -0400
+++ b/repository_dependencies.xml	Thu Apr 28 17:01:12 2016 -0400
@@ -1,4 +1,4 @@
 <?xml version="1.0"?>
-<repositories description="Stem Cell Commons FastQC workflow require FastQC tools">
+<repositories description="Stem Cell Commons FastQC workflow require FastQC tool">
   <repository toolshed="https://toolshed.g2.bx.psu.edu" name="fastqc" owner="devteam" changeset_revision="3fdc1a74d866" />
 </repositories>