Mercurial > repos > stemcellcommons > merging_workflows
view Merge_BAM.ga @ 0:5703e64e15e9 draft default tip
Initial upload
author | stemcellcommons |
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date | Tue, 05 Dec 2017 14:58:39 -0500 |
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{ "a_galaxy_workflow": "true", "annotation": "{\n \"description\": \"Merge a list of BAM files into a single BAM.\",\n \"file_relationship\": {\n \"file_relationship\": {},\n \"value_type\": \"LIST\",\n \"name\": \"List of BAM Files\",\n \"input_files\": [\n {\n \"allowed_filetypes\": [{\"name\": \"BAM\"}],\n \"name\": \"Input File\",\n \"description\": \"File to be merged\"\n }\n ]\n }\n}", "format-version": "0.1", "name": "Merge BAM", "steps": { "0": { "annotation": "", "content_id": null, "id": 0, "input_connections": {}, "inputs": [ { "description": "", "name": "Input Dataset Collection" } ], "label": null, "name": "Input dataset collection", "outputs": [], "position": { "left": 200.5, "top": 284.5 }, "tool_errors": null, "tool_id": null, "tool_state": "{\"collection_type\": \"list\", \"name\": \"Input Dataset Collection\"}", "tool_version": null, "type": "data_collection_input", "uuid": "d9e52442-15c8-45ba-a07e-fdf9de76ac43", "workflow_outputs": [ { "label": null, "output_name": "output", "uuid": "463f98ce-580f-4a70-8d89-1be510478bb9" } ] }, "1": { "annotation": "", "content_id": "toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MergeSamFiles/1.126.0", "id": 1, "input_connections": { "inputFile": { "id": 0, "output_name": "output" } }, "inputs": [], "label": null, "name": "MergeSamFiles", "outputs": [ { "name": "outFile", "type": "bam" } ], "position": { "left": 575, "top": 285 }, "post_job_actions": { "RenameDatasetActionoutFile": { "action_arguments": { "newname": "merged" }, "action_type": "RenameDatasetAction", "output_name": "outFile" } }, "tool_errors": null, "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MergeSamFiles/1.126.0", "tool_state": "{\"__page__\": 0, \"__rerun_remap_job_id__\": null, \"comments\": \"[]\", \"assume_sorted\": \"\\\"False\\\"\", \"merge_sequence_dictionaries\": \"\\\"False\\\"\", \"validation_stringency\": \"\\\"LENIENT\\\"\", \"inputFile\": \"null\"}", "tool_version": "1.126.0", "type": "tool", "uuid": "0f22ffbb-d375-4d1f-9b53-0abce7390f66", "workflow_outputs": [ { "label": null, "output_name": "outFile", "uuid": "82e3ef46-e532-4e2f-bafb-f0875211282f" } ] } }, "uuid": "a920711d-9852-4048-9694-eda710a7513a" }