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annotate test-data/test.vcf @ 1:85bdf226b67b default tip

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add vcf2genotypes and test-data
author superyuan <shuaiyuan.emory@gmail.com>
date Mon, 30 Jun 2014 10:49:54 -0400
parents
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85bdf226b67b add vcf2genotypes and test-data
superyuan <shuaiyuan.emory@gmail.com>
parents:
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1 ##fileformat=VCFv4.0
85bdf226b67b add vcf2genotypes and test-data
superyuan <shuaiyuan.emory@gmail.com>
parents:
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2 ##fileDate=20110201
85bdf226b67b add vcf2genotypes and test-data
superyuan <shuaiyuan.emory@gmail.com>
parents:
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3 ##reference=NCBI37
85bdf226b67b add vcf2genotypes and test-data
superyuan <shuaiyuan.emory@gmail.com>
parents:
diff changeset
4 ##source=Affymetrix_Axiom_DB
85bdf226b67b add vcf2genotypes and test-data
superyuan <shuaiyuan.emory@gmail.com>
parents:
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5 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
85bdf226b67b add vcf2genotypes and test-data
superyuan <shuaiyuan.emory@gmail.com>
parents:
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6 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA18501 NA18502 NA18504 NA18505 NA18507 NA18508 NA18516 NA18517 NA18522 NA18523 NA18852 NA18853 NA18855 NA18856 NA18858 NA18859 NA18861 NA18862 NA18870 NA18871 NA18912 NA18913 NA19092 NA19093 NA19098 NA19099 NA19101 NA19102 NA19116 NA19119 NA19127 NA19128 NA19130 NA19131 NA19137 NA19138 NA19140 NA19141 NA19143 NA19144 NA19152 NA19153 NA19159 NA19160 NA19171 NA19172 NA19192 NA19193 NA19200 NA19201 NA19203 NA19204 NA19206 NA19207 NA19209 NA19210 NA19222 NA19223 NA19238 NA19239
85bdf226b67b add vcf2genotypes and test-data
superyuan <shuaiyuan.emory@gmail.com>
parents:
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7 1 305 rs5 C T . PASS . GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0
85bdf226b67b add vcf2genotypes and test-data
superyuan <shuaiyuan.emory@gmail.com>
parents:
diff changeset
8 1 334 . A C . PASS . GT 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0