<tool id="DiploidConstructor1" name="Diploid Constructor" version="1.0.1">
  <description>Constructs Diploid Reference Genome</description>
  <command interpreter="python">DiploidConstructor.py
        -r '$input'
        -g '$genotypes'
        -l '$length'
	-d '$indel'
	-s '$gender'
	-o $out_file1
  </command>
  <inputs>
    <param format="fasta" name="input" type="data" label="Haploid Reference Genome"/>
    <param format="genotypes" name="genotypes" type="data" label="Genotypes"/>
    <param format="txt" name="length" type="text" value="36" label="Length of the reads"/>
    <param format="txt" name="indel" type="text" value="0" label="Max deletion on reference genome"/>
    <param name="gender" type="select" label="Gender">
        <option value="male">male</option>
        <option value="female">female</option>
    </param>

  </inputs>
  <outputs>
    <data format="fasta" name="out_file1" metadata_source="input"/>
  </outputs>
  <help>
</help>
</tool>