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view tools/refeditor/MappingConverter.xml @ 0:9259f2939357

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add refeditor into galaxy toolshed
author superyuan <shuaiyuan.emory@gmail.com>
date Thu, 12 Jun 2014 04:56:10 -0400
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<tool id="MappingConverter1" name="Mapping Converter" version="1.0.1">
  <description>Converts intermediate SAM file to final SAM file</description>
  <command interpreter="python">MappingConverter.py
        -i '$input'
        -m '$hg19di'
	-o $out_file1
  </command>
  <inputs>
    <param format="sam" name="input" type="data" label="Input SAM File"/>
    <param format="fasta" name="hg19di" type="data" label="Dipolid Reference Genome"/>

  </inputs>
  <outputs>
    <data format="sam" name="out_file1" metadata_source="input"/>
  </outputs>
  <help>
</help>
</tool>