--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/pyCRAC/pyFastqSplitter.pl	Tue Jun 18 09:11:00 2013 -0400
@@ -0,0 +1,27 @@
+#!/usr/bin/perl -w
+use strict;
+use Getopt::Long;
+
+my %opt;
+
+
+GetOptions(\%opt, "f=s", "c=s", "o1=s", "o2=s","file_type=s", "version","id=s");
+
+my $cmnd;
+
+if (exists $opt{version}){
+	$cmnd = "python /usr/local/bin/pyFastqSplitter.py --version";
+}
+else{
+	$cmnd = "python /usr/local/bin/pyFastqSplitter.py -f $opt{f} -o $opt{id} --file_type=$opt{file_type}";
+
+	if(defined $opt{c}){
+		$cmnd.= " -c $opt{c}";
+	}
+
+}
+
+system $cmnd;
+system "mv $opt{id}_1.$opt{file_type} $opt{o1}";
+system "mv $opt{id}_2.$opt{file_type} $opt{o2}";
+