Mercurial > repos > sybila > ebcsgen_pctl_parameter_synthesis
view ebcsgen_pctl_parameter_synthesis.py @ 0:cf609f659b21 draft
planemo upload for repository https://github.com/sybila/galaxytools/tree/master/tools/ebcsgen commit a7263af5f87e39dd0d3d29924e530c88d83a5ee6
author | sybila |
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date | Fri, 07 Oct 2022 12:37:22 +0000 |
parents | |
children | 3bb6c1e9252e |
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import argparse from eBCSgen.Analysis.PCTL import PCTL from eBCSgen.Errors.FormulaParsingError import FormulaParsingError from eBCSgen.Errors.InvalidInputError import InvalidInputError from eBCSgen.Parsing.ParseBCSL import load_TS_from_json from eBCSgen.Parsing.ParsePCTLformula import PCTLparser args_parser = argparse.ArgumentParser(description='Parameter synthesis') args_parser._action_groups.pop() required = args_parser.add_argument_group('required arguments') optional = args_parser.add_argument_group('optional arguments') required.add_argument('--transition_file', required=True) required.add_argument('--output', type=str, required=True) required.add_argument('--formula', type=str, required=True) optional.add_argument('--region', type=str) args = args_parser.parse_args() if args.region: region = args.region.replace("=", "<=") else: region = None ts = load_TS_from_json(args.transition_file) if len(ts.params) == 0: raise InvalidInputError("Provided model is not parametrised - parameter synthesis cannot be executed.") if "?" not in args.formula: if not region: params = set() else: params = {param.split("<=")[1] for param in region.split(",")} undefined = set(ts.params) - params if undefined: raise InvalidInputError("Intervals undefined for parameters: {}.".format(", ".join(undefined))) formula = PCTLparser().parse(args.formula) if formula.success: result = PCTL.parameter_synthesis(ts, formula, region) f = open(args.output, "w") f.write(result.decode("utf-8")) f.close() else: raise FormulaParsingError(formula.data, args.formula)