Mercurial > repos > sybila > ebcsgen_sbml_export

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planemo upload for repository https://github.com/sybila/galaxytools/tree/master/tools/ebcsgen commit 4719a69f514aed27d90c7017f052463b0b43cbb0
author sybila
date Sat, 15 Oct 2022 09:23:58 +0000
parents 2f3f67415022
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2f3f67415022 planemo upload for repository https://github.com/sybila/galaxytools/tree/master/tools/ebcsgen commit 74a375c33936106a892dafb042be953a943af026
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1 <tool id="eBCSgen_SBML_export" name="eBCSgen SBML export" version="@TOOL_VERSION@_galaxy0">
2f3f67415022 planemo upload for repository https://github.com/sybila/galaxytools/tree/master/tools/ebcsgen commit 74a375c33936106a892dafb042be953a943af026
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2 <description>- export given BCSL model to SBML employing multi package</description>
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3 <macros>
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4 <import>macros.xml</import>
2f3f67415022 planemo upload for repository https://github.com/sybila/galaxytools/tree/master/tools/ebcsgen commit 74a375c33936106a892dafb042be953a943af026
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5 </macros>
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6 <expand macro="creator"/>
2f3f67415022 planemo upload for repository https://github.com/sybila/galaxytools/tree/master/tools/ebcsgen commit 74a375c33936106a892dafb042be953a943af026
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7 <requirements>
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8 <container type="docker">sybila/ebcsgen:v@TOOL_VERSION@</container>
2f3f67415022 planemo upload for repository https://github.com/sybila/galaxytools/tree/master/tools/ebcsgen commit 74a375c33936106a892dafb042be953a943af026
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9 </requirements>
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10
2f3f67415022 planemo upload for repository https://github.com/sybila/galaxytools/tree/master/tools/ebcsgen commit 74a375c33936106a892dafb042be953a943af026
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11 <options sanitize="False"/>
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12 <command>python3 ${__tool_directory__}/ebcsgen_sbml_export.py
2f3f67415022 planemo upload for repository https://github.com/sybila/galaxytools/tree/master/tools/ebcsgen commit 74a375c33936106a892dafb042be953a943af026
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13 --model '$model'
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14 --output '$output'
2f3f67415022 planemo upload for repository https://github.com/sybila/galaxytools/tree/master/tools/ebcsgen commit 74a375c33936106a892dafb042be953a943af026
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15 </command>
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17 <inputs>
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18 <param format="bcsl.model" name="model" type="data" label="Model file" help="Provide a BCSL model file"/>
2f3f67415022 planemo upload for repository https://github.com/sybila/galaxytools/tree/master/tools/ebcsgen commit 74a375c33936106a892dafb042be953a943af026
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19 </inputs>
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21 <outputs>
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22 <data format="xml" name="output"/>
2f3f67415022 planemo upload for repository https://github.com/sybila/galaxytools/tree/master/tools/ebcsgen commit 74a375c33936106a892dafb042be953a943af026
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23 </outputs>
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25 <tests>
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26 <test>
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27 <param name="model" value="simple.bcsl.model" ftype="bcsl.model"/>
2f3f67415022 planemo upload for repository https://github.com/sybila/galaxytools/tree/master/tools/ebcsgen commit 74a375c33936106a892dafb042be953a943af026
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28 <output name="output" ftype="xml">
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29 <assert_contents>
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30 <has_text text='compartment id="cell"'/>
2f3f67415022 planemo upload for repository https://github.com/sybila/galaxytools/tree/master/tools/ebcsgen commit 74a375c33936106a892dafb042be953a943af026
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31 <has_text text='name="P(S{i},T{i})::cell"'/>
2f3f67415022 planemo upload for repository https://github.com/sybila/galaxytools/tree/master/tools/ebcsgen commit 74a375c33936106a892dafb042be953a943af026
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32 <has_text text='multi:speciesType multi:id="st_T"'/>
2f3f67415022 planemo upload for repository https://github.com/sybila/galaxytools/tree/master/tools/ebcsgen commit 74a375c33936106a892dafb042be953a943af026
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33 <has_text text='speciesFeatureType multi:id="S_feature_type"'/>
2f3f67415022 planemo upload for repository https://github.com/sybila/galaxytools/tree/master/tools/ebcsgen commit 74a375c33936106a892dafb042be953a943af026
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34 <has_text text='multi:id="P_0_S"'/>
2f3f67415022 planemo upload for repository https://github.com/sybila/galaxytools/tree/master/tools/ebcsgen commit 74a375c33936106a892dafb042be953a943af026
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35 <has_n_lines n="157" delta="1"/>
2f3f67415022 planemo upload for repository https://github.com/sybila/galaxytools/tree/master/tools/ebcsgen commit 74a375c33936106a892dafb042be953a943af026
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36 </assert_contents>
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37 </output>
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38 </test>
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39 </tests>
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41 </tool>