Mercurial > repos > sybila > ebcsgen_sbml_export

comparison ebcsgen_sbml_export.xml @ 0:2f3f67415022 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/sybila/galaxytools/tree/master/tools/ebcsgen commit 74a375c33936106a892dafb042be953a943af026
author sybila
date Sat, 08 Oct 2022 12:55:26 +0000
parents
children
comparison
equal deleted inserted replaced
-1:000000000000 0:2f3f67415022
1 <tool id="eBCSgen_SBML_export" name="eBCSgen SBML export" version="@TOOL_VERSION@_galaxy0">
2 <description>- export given BCSL model to SBML employing multi package</description>
3 <macros>
4 <import>macros.xml</import>
5 </macros>
6 <expand macro="creator"/>
7 <requirements>
8 <container type="docker">sybila/ebcsgen:v@TOOL_VERSION@</container>
9 </requirements>
10
11 <options sanitize="False"/>
12 <command>python3 ${__tool_directory__}/ebcsgen_sbml_export.py
13 --model '$model'
14 --output '$output'
15 </command>
16
17 <inputs>
18 <param format="bcsl.model" name="model" type="data" label="Model file" help="Provide a BCSL model file"/>
19 </inputs>
20
21 <outputs>
22 <data format="xml" name="output"/>
23 </outputs>
24
25 <tests>
26 <test>
27 <param name="model" value="simple.bcsl.model" ftype="bcsl.model"/>
28 <output name="output" ftype="xml">
29 <assert_contents>
30 <has_text text='compartment id="cell"'/>
31 <has_text text='name="P(S{i},T{i})::cell"'/>
32 <has_text text='multi:speciesType multi:id="st_T"'/>
33 <has_text text='speciesFeatureType multi:id="S_feature_type"'/>
34 <has_text text='multi:id="P_0_S"'/>
35 <has_n_lines n="157" delta="1"/>
36 </assert_contents>
37 </output>
38 </test>
39 </tests>
40
41 </tool>