Mercurial > repos > sybila > ebcsgen_sbml_export
comparison ebcsgen_sbml_export.xml @ 0:2f3f67415022 draft
planemo upload for repository https://github.com/sybila/galaxytools/tree/master/tools/ebcsgen commit 74a375c33936106a892dafb042be953a943af026
author | sybila |
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date | Sat, 08 Oct 2022 12:55:26 +0000 |
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-1:000000000000 | 0:2f3f67415022 |
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1 <tool id="eBCSgen_SBML_export" name="eBCSgen SBML export" version="@TOOL_VERSION@_galaxy0"> | |
2 <description>- export given BCSL model to SBML employing multi package</description> | |
3 <macros> | |
4 <import>macros.xml</import> | |
5 </macros> | |
6 <expand macro="creator"/> | |
7 <requirements> | |
8 <container type="docker">sybila/ebcsgen:v@TOOL_VERSION@</container> | |
9 </requirements> | |
10 | |
11 <options sanitize="False"/> | |
12 <command>python3 ${__tool_directory__}/ebcsgen_sbml_export.py | |
13 --model '$model' | |
14 --output '$output' | |
15 </command> | |
16 | |
17 <inputs> | |
18 <param format="bcsl.model" name="model" type="data" label="Model file" help="Provide a BCSL model file"/> | |
19 </inputs> | |
20 | |
21 <outputs> | |
22 <data format="xml" name="output"/> | |
23 </outputs> | |
24 | |
25 <tests> | |
26 <test> | |
27 <param name="model" value="simple.bcsl.model" ftype="bcsl.model"/> | |
28 <output name="output" ftype="xml"> | |
29 <assert_contents> | |
30 <has_text text='compartment id="cell"'/> | |
31 <has_text text='name="P(S{i},T{i})::cell"'/> | |
32 <has_text text='multi:speciesType multi:id="st_T"'/> | |
33 <has_text text='speciesFeatureType multi:id="S_feature_type"'/> | |
34 <has_text text='multi:id="P_0_S"'/> | |
35 <has_n_lines n="157" delta="1"/> | |
36 </assert_contents> | |
37 </output> | |
38 </test> | |
39 </tests> | |
40 | |
41 </tool> |