Mercurial > repos > sybila > recetox_aplcms_unsupervised

comparison ebcsgen_generate_ts.py @ 0:3bdec3b22152 draft default tip

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planemo upload for repository https://github.com/sybila/galaxytools/tree/master/tools/ebcsgen commit 7befebc7a9bc40d8b97f4dac752ad9646aac40de
author sybila
date Fri, 09 Sep 2022 13:06:32 +0000
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-1:000000000000 0:3bdec3b22152
1 import argparse
2
3 from eBCSgen.Errors.ModelParsingError import ModelParsingError
4 from eBCSgen.Errors.UnspecifiedParsingError import UnspecifiedParsingError
5 from eBCSgen.Parsing.ParseBCSL import Parser
6
7 import numpy as np
8
9
10 args_parser = argparse.ArgumentParser(description='Transition system generating')
11
12 args_parser._action_groups.pop()
13 required = args_parser.add_argument_group('required arguments')
14 optional = args_parser.add_argument_group('optional arguments')
15
16 required.add_argument('--model', type=str, required=True)
17 required.add_argument('--output', type=str, required=True)
18 required.add_argument('--direct', required=True)
19
20 optional.add_argument('--max_time', type=float, default=np.inf)
21 optional.add_argument('--max_size', type=float, default=np.inf)
22 optional.add_argument('--bound', type=int, default=None)
23
24 args = args_parser.parse_args()
25
26 model_parser = Parser("model")
27 model_str = open(args.model, "r").read()
28
29 model = model_parser.parse(model_str)
30 if model.success:
31 if eval(args.direct):
32 ts = model.data.generate_direct_transition_system(args.max_time,
33 args.max_size,
34 args.bound)
35 ts.change_to_vector_backend()
36 else:
37 vm = model.data.to_vector_model(args.bound)
38 ts = vm.generate_transition_system(None, args.max_time, args.max_size)
39 ts.save_to_json(args.output, model.data.params)
40 else:
41 if "error" in model.data:
42 raise UnspecifiedParsingError(model.data["error"])
43 raise ModelParsingError(model.data, model_str)