Mercurial > repos > tduigou > cloning_simulation

annotate test-data/BioBrick_assembly_dataset/BBa_J23119_prom.gb @ 1:2655e08cd61a draft default tip

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planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit db4ac861e1d03fcdfe94321d858839124e493930-dirty
author tduigou
date Wed, 23 Jul 2025 09:46:59 +0000
parents 3a3b0f7cb5c2
children
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3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
parents:
diff changeset
1 LOCUS BBa_J23119_prom 2190 bp DNA circular UNK 01-JAN-1980
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
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2 DEFINITION .
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
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3 ACCESSION BBa_J23119_prom
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
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4 VERSION BBa_J23119_prom
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
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5 KEYWORDS .
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
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6 SOURCE .
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
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7 ORGANISM .
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
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8 .
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
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9 FEATURES Location/Qualifiers
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
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10 misc_feature 1..21
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
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11 /label="suffix"
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
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12 misc_feature 22..93
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
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13 /label="E. coli his operon terminator"
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
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14 stem_loop 30..64
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
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15 /label="terminator stem loop"
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
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16 primer_bind 157..176
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
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17 /label="VR"
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
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18 CDS 261..875
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
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19 /label="rep(pMB1) (rev)"
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
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20 misc_feature 276
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
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21 /label="ORI"
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
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22 CDS 1035..1895
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
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23 /label="ampR (rev)"
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
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24 primer_bind 2018..2037
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
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25 /label="VF2"
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
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26 misc_feature 2094..2097
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
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27 /label="end of terminator"
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
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28 stem_loop 2107..2126
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
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29 /label="terminator stem loop"
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
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30 misc_feature 2136..2157
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
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31 /label="prefix"
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
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32 misc_feature 2156..2190
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
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33 /label="BBa_J23119_prom"
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
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34 ORIGIN
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
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35 1 tactagtagc ggccgctgca gtccggcaaa aaagggcaag gtgtcaccac cctgcccttt
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
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36 61 ttctttaaaa ccgaaaagat tacttcgcgt tatgcaggct tcctcgctca ctgactcgct
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
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37 121 gcgctcggtc gttcggctgc ggcgagcggt atcagctcac tcaaaggcgg taatacggtt
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
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38 181 atccacagaa tcaggggata acgcaggaaa gaacatgtga gcaaaaggcc agcaaaaggc
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
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diff changeset
39 241 caggaaccgt aaaaaggccg cgttgctggc gtttttccac aggctccgcc cccctgacga
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
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diff changeset
40 301 gcatcacaaa aatcgacgct caagtcagag gtggcgaaac ccgacaggac tataaagata
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
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diff changeset
41 361 ccaggcgttt ccccctggaa gctccctcgt gcgctctcct gttccgaccc tgccgcttac
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
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diff changeset
42 421 cggatacctg tccgcctttc tcccttcggg aagcgtggcg ctttctcata gctcacgctg
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
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diff changeset
43 481 taggtatctc agttcggtgt aggtcgttcg ctccaagctg ggctgtgtgc acgaaccccc
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
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diff changeset
44 541 cgttcagccc gaccgctgcg ccttatccgg taactatcgt cttgagtcca acccggtaag
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
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diff changeset
45 601 acacgactta tcgccactgg cagcagccac tggtaacagg attagcagag cgaggtatgt
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
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diff changeset
46 661 aggcggtgct acagagttct tgaagtggtg gcctaactac ggctacacta gaagaacagt
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
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diff changeset
47 721 atttggtatc tgcgctctgc tgaagccagt taccttcgga aaaagagttg gtagctcttg
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
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diff changeset
48 781 atccggcaaa caaaccaccg ctggtagcgg tggttttttt gtttgcaagc agcagattac
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
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49 841 gcgcagaaaa aaaggatctc aagaagatcc tttgatcttt tctacggggt ctgacgctca
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
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diff changeset
50 901 gtggaacgaa aactcacgtt aagggatttt ggtcatgaga ttatcaaaaa ggatcttcac
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
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diff changeset
51 961 ctagatcctt ttaaattaaa aatgaagttt taaatcaatc taaagtatat atgagtaaac
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
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diff changeset
52 1021 ttggtctgac agttaccaat gcttaatcag tgaggcacct atctcagcga tctgtctatt
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
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diff changeset
53 1081 tcgttcatcc atagttgcct gactccccgt cgtgtagata actacgatac gggagggctt
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
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diff changeset
54 1141 accatctggc cccagtgctg caatgatacc gcgagaccca cgctcaccgg ctccagattt
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
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diff changeset
55 1201 atcagcaata aaccagccag ccggaagggc cgagcgcaga agtggtcctg caactttatc
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
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diff changeset
56 1261 cgcctccatc cagtctatta attgttgccg ggaagctaga gtaagtagtt cgccagttaa
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
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diff changeset
57 1321 tagtttgcgc aacgttgttg ccattgctac aggcatcgtg gtgtcacgct cgtcgtttgg
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
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diff changeset
58 1381 tatggcttca ttcagctccg gttcccaacg atcaaggcga gttacatgat cccccatgtt
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
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diff changeset
59 1441 gtgcaaaaaa gcggttagct ccttcggtcc tccgatcgtt gtcagaagta agttggccgc
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
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diff changeset
60 1501 agtgttatca ctcatggtta tggcagcact gcataattct cttactgtca tgccatccgt
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
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diff changeset
61 1561 aagatgcttt tctgtgactg gtgagtactc aaccaagtca ttctgagaat agtgtatgcg
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
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diff changeset
62 1621 gcgaccgagt tgctcttgcc cggcgtcaat acgggataat accgcgccac atagcagaac
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
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diff changeset
63 1681 tttaaaagtg ctcatcattg gaaaacgttc ttcggggcga aaactctcaa ggatcttacc
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
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diff changeset
64 1741 gctgttgaga tccagttcga tataacccac tcgtgcaccc aactgatctt cagcatcttt
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
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65 1801 tactttcacc agcgtttctg ggtgagcaaa aacaggaagg caaaatgccg caaaaaaggg
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
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66 1861 aataagggcg acacggaaat gttgaatact catactcttc ctttttcaat attattgaag
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
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67 1921 catttatcag ggttattgtc tcatgagcgg atacatattt gaatgtattt agaaaaataa
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
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68 1981 acaaataggg gttccgcgca catttccccg aaaagtgcca cctgacgtct aagaaaccat
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
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69 2041 tattatcatg acattaacct ataaaaatag gcgtatcacg aggcagaatt tcagataaaa
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
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diff changeset
70 2101 aaaatcctta gctttcgcta aggatgattt ctggaattcg cggccgcttc tagagttgac
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
tduigou
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diff changeset
71 2161 agctagctca gtcctaggta taatgctagc
3a3b0f7cb5c2 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
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72 //