Mercurial > repos > tduigou > cloning_simulation

comparison test-data/BASIC_assembly_dataset/RFP.gb @ 0:3a3b0f7cb5c2 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
author tduigou
date Wed, 11 Jun 2025 09:32:59 +0000
parents
children
comparison
equal deleted inserted replaced
-1:000000000000 0:3a3b0f7cb5c2
1 LOCUS RFP 3723 bp DNA circular UNK 01-JAN-1980
2 DEFINITION
3 ACCESSION
4 VERSION
5 SOURCE
6 ORGANISM
7 COMMENT Serial Cloner Genbank Format
8 COMMENT SerialCloner_Type=DNA
9 COMMENT SerialCloner_Comments=seq verified 20140514
10 COMMENT SerialCloner_Ends=0,0,,0,
11 FEATURES Location/Qualifiers
12 primer_bind complement(796..815)
13 /label=T7
14 /SerialCloner_Color=&h008B8B
15 /SerialCloner_Show=True
16 /SerialCloner_Protect=False
17 /SerialCloner_Arrow=True
18 rep_origin 2321..2949
19 /label=ColE1 origin
20 /SerialCloner_Color=&h4682B4
21 /SerialCloner_Show=True
22 /SerialCloner_Protect=False
23 /SerialCloner_Arrow=True
24 misc_binding 3292..3314
25 /label=LacO
26 /SerialCloner_Color=&h6495ED
27 /SerialCloner_Show=True
28 /SerialCloner_Protect=False
29 /SerialCloner_Arrow=True
30 CDS 1510..2169
31 /label=AmpR
32 /SerialCloner_Color=&h8FBC8F
33 /SerialCloner_Show=True
34 /SerialCloner_Protect=False
35 /SerialCloner_Arrow=True
36 Promoter 1242..1270
37 /label=Amp prom
38 /SerialCloner_Color=&h4682B4
39 /SerialCloner_Show=True
40 /SerialCloner_Protect=False
41 /SerialCloner_Arrow=True
42 misc_feature complement(799..815)
43 /label=T7-promoter
44 /SerialCloner_Color=&hFF00FF
45 /SerialCloner_Show=True
46 /SerialCloner_Protect=False
47 /SerialCloner_Arrow=True
48 misc_feature 19..726
49 /label=mcherry
50 /SerialCloner_Color=&hFF0080
51 /SerialCloner_Show=True
52 /SerialCloner_Protect=False
53 /SerialCloner_Arrow=True
54 misc_feature 1..18
55 /label=Prefix
56 /SerialCloner_Color=&hFF0080
57 /SerialCloner_Show=True
58 /SerialCloner_Protect=False
59 /SerialCloner_Arrow=True
60 misc_feature 730..747
61 /label=Suffix
62 /SerialCloner_Color=&hFF00FF
63 /SerialCloner_Show=True
64 /SerialCloner_Protect=False
65 /SerialCloner_Arrow=True
66 misc_feature complement(1313..1509)
67 /label=pB1a promoter
68 /SerialCloner_Color=&h84A4C0
69 /SerialCloner_Show=True
70 /SerialCloner_Protect=False
71 /SerialCloner_Arrow=True
72 ORIGIN
73 1 TCTGGTGGGT CTCTGTCCAT GGTGAGCAAG GGCGAGGAGG ATAACATGGC CATCATCAAG
74 61 GAGTTCATGC GCTTCAAGGT GCACATGGAG GGCTCCGTGA ACGGCCACGA GTTCGAGATC
75 121 GAGGGCGAGG GCGAGGGCCG CCCCTACGAG GGCACCCAGA CCGCCAAGCT GAAGGTGACC
76 181 AAGGGTGGCC CCCTGCCCTT CGCCTGGGAC ATCCTGTCCC CTCAGTTCAT GTACGGCTCC
77 241 AAGGCCTACG TGAAGCACCC CGCCGACATC CCCGACTACT TGAAGCTGTC CTTCCCCGAG
78 301 GGCTTCAAGT GGGAGCGCGT GATGAACTTC GAGGACGGCG GCGTGGTGAC CGTGACCCAG
79 361 GACTCCTCCT TGCAGGACGG CGAGTTCATC TACAAGGTGA AGCTGCGCGG CACCAACTTC
80 421 CCCTCCGACG GCCCCGTAAT GCAGAAGAAG ACCATGGGCT GGGAGGCCTC CTCCGAGCGG
81 481 ATGTACCCCG AGGACGGCGC CCTGAAGGGC GAGATCAAGC AGAGGCTGAA GCTGAAGGAC
82 541 GGCGGCCACT ACGACGCTGA GGTCAAGACC ACCTACAAGG CCAAGAAGCC CGTGCAGCTG
83 601 CCCGGCGCCT ACAACGTCAA CATCAAGTTG GACATCACCT CCCACAACGA GGACTACACC
84 661 ATCGTGGAAC AGTACGAACG CGCCGAGGGC CGCCACTCCA CCGGCGGCAT GGACGAGCTG
85 721 TACAAGTAAG GCTCGGGAGA CCTATCGTAT CTTGCTGAAA AACTCGAGCC ATCCGGAAGA
86 781 TCTGGCGGCC GCTCTCCCTA TAGTGAGTCG TATTACGCCG GATGGATATG GTGTTCAGGC
87 841 ACAAGTGTTA AAGCAGTTGA TTTTATTCAC TATGATGAAA AAAACAATGA ATGGAACCTG
88 901 CTCCAAGTTA AAAATAGAGA TAATACCGAA AACTCATCGA GTAGTAAGAT TAGAGATAAT
89 961 ACAACAATAA AAAAATGGTT TAGAACTTAC TCACAGCGTG ATGCTACTAA TTGGGACAAT
90 1021 TTTCCAGATG AAGTATCATC TAAGAATTTA AATGAAGAAG ACTTCAGAGC TTTTGTTAAA
91 1081 AATTATTTGG CAAAAATAAT ATAATTCGGC TGCAGGGGCG GCCTCGTGAT ACGCCTATTT
92 1141 TTATAGGTTA ATGTCATGAT AATAATGGTT TCTTAGACGT CAGGTGGCAC TTTTCGGGGA
93 1201 AATGTGCGCG GAACCCCTAT TTGTTTATTT TTCTAAATAC ATTCAAATAT GTATCCGCTC
94 1261 ATGAGACAAT AACCCTGATA AATGCTTCAA TAATATTGAA AAAGGAAGAG TATGAGTATT
95 1321 CAACATTTCC GTGTCGCCCT TATTCCCTTT TTTGCGGCAT TTTGCCTTCC TGTTTTTGCT
96 1381 CACCCAGAAA CGCTGGTGAA AGTAAAAGAT GCTGAAGATC AGTTGGGTGC ACGAGTGGGT
97 1441 TACATCGAAC TGGATCTCAA CAGCGGTAAG ATCCTTGAGA GTTTTCGCCC CGAAGAACGT
98 1501 TTTCCAATGA TGAGCACTTT TAAAGTTCTG CTATGTGGCG CGGTATTATC CCGTATTGAC
99 1561 GCCGGGCAAG AGCAACTCGG TCGCCGCATA CACTATTCTC AGAATGACTT GGTTGAGTAC
100 1621 TCACCAGTCA CAGAAAAGCA TCTTACGGAT GGCATGACAG TAAGAGAATT ATGCAGTGCT
101 1681 GCCATAACCA TGAGTGATAA CACTGCGGCC AACTTACTTC TGACAACGAT CGGAGGACCG
102 1741 AAGGAGCTAA CCGCTTTTTT GCACAACATG GGGGATCATG TAACTCGCCT TGATCGTTGG
103 1801 GAACCGGAGC TGAATGAAGC CATACCAAAC GACGAGCGTG ACACCACGAT GCCTGTAGCA
104 1861 ATGGCAACAA CGTTGCGCAA ACTATTAACT GGCGAACTAC TTACTCTAGC TTCCCGGCAA
105 1921 CAATTAATAG ACTGGATGGA GGCGGATAAA GTTGCAGGAC CACTTCTGCG CTCGGCCCTT
106 1981 CCGGCTGGCT GGTTTATTGC TGATAAATCT GGAGCCGGTG AGCGTGGGTC TCGCGGTATC
107 2041 ATTGCAGCAC TGGGGCCAGA TGGTAAGCCC TCCCGTATCG TAGTTATCTA CACGACGGGG
108 2101 AGTCAGGCAA CTATGGATGA ACGAAATAGA CAGATCGCTG AGATAGGTGC CTCACTGATT
109 2161 AAGCATTGGT AACTGTCAGA CCAAGTTTAC TCATATATAC TTTAGATTGA TTTAAAACTT
110 2221 CATTTTTAAT TTAAAAGGAT CTAGGTGAAG ATCCTTTTTG ATAATCTCAT GACCAAAATC
111 2281 CCTTAACGTG AGTTTTCGTT CCACTGAGCG TCAGACCCCG TAGAAAAGAT CAAAGGATCT
112 2341 TCTTGAGATC CTTTTTTTCT GCGCGTAATC TGCTGCTTGC AAACAAAAAA ACCACCGCTA
113 2401 CCAGCGGTGG TTTGTTTGCC GGATCAAGAG CTACCAACTC TTTTTCCGAA GGTAACTGGC
114 2461 TTCAGCAGAG CGCAGATACC AAATACTGTC CTTCTAGTGT AGCCGTAGTT AGGCCACCAC
115 2521 TTCAAGAACT CTGTAGCACC GCCTACATAC CTCGCTCTGC TAATCCTGTT ACCAGTGGCT
116 2581 GCTGCCAGTG GCGATAAGTC GTGTCTTACC GGGTTGGACT CAAGACGATA GTTACCGGAT
117 2641 AAGGCGCAGC GGTCGGGCTG AACGGGGGGT TCGTGCACAC AGCCCAGCTT GGAGCGAACG
118 2701 ACCTACACCG AACTGAGATA CCTACAGCGT GAGCTATGAG AAAGCGCCAC GCTTCCCGAA
119 2761 GGGAGAAAGG CGGACAGGTA TCCGGTAAGC GGCAGGGTCG GAACAGGAGA GCGCACGAGG
120 2821 GAGCTTCCAG GGGGAAACGC CTGGTATCTT TATAGTCCTG TCGGGTTTCG CCACCTCTGA
121 2881 CTTGAGCGTC GATTTTTGTG ATGCTCGTCA GGGGGGCGGA GCCTATGGAA AAACGCCAGC
122 2941 AACGCGGCCT TTTTACGGTT CCTGGCCTTT TGCTGGCCTT TTGCTCACAT GTTCTTTCCT
123 3001 GCGTTATCCC CTGATTCTGT GGATAACCGT ATTACCGCCT TTGAGTGAGC TGATACCGCT
124 3061 CGCCGCAGCC GAACGACCGA GCGCAGCGAG TCAGTGAGCG AGGAAGCGGA AGAGCGCCCA
125 3121 ATACGCAAAC CGCCTCTCCC CGCGCGTTGG CCGATTCATT AATGCAGCTG GCACGACAGG
126 3181 TTTCCCGACT GGAAAGCAAT TGGCAGTGAG CGCAACGCAA TTAATGTGAG TTAGCTCACT
127 3241 CATTAGGCAC CCCAGGCTTT ACACTTTATG CTTCCGGCTC GTATAATGTG TGGAATTGTG
128 3301 AGCGGATAAC AATTTCACAC AGGAGGTTTA AACTTTAAAC ATGTCAAAAG AGACGTCTTT
129 3361 TGTTAAGAAT GCTGAGGAAC TTGCAAAGCA AAAAATGGAT GCTATTAACC CTGAACTTTC
130 3421 TTCAAAATTT AAATTTTTAA TAAAATTCCT GTCTCAGTTT CCTGAAGCTT GCTCTAAACC
131 3481 TCGTTCAAAA AAAATGCAGA ATAAAGTTGG TCAAGAGGAA CATATTGAAT ATTTAGCTCG
132 3541 TAGTTTTCAT GAGAGTCGAT TGCCAAGAAA ACCCACGCCA CCTACAACGG TTCCTGATGA
133 3601 GGTGGTTAGC ATAGTTCTTA ATATAAGTTT TAATATACAG CCTGAAAATC TTGAGAGAAT
134 3661 AAAAGAAGAA CATCGATTTT CCATGGCAGC TGAGAATATT GTAGGAGATC TTCTAGAAAG
135 3721 ATA
136 //