diff test-data/BASIC_assembly_dataset/promoter.gb @ 0:3a3b0f7cb5c2 draft

planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
author tduigou
date Wed, 11 Jun 2025 09:32:59 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/BASIC_assembly_dataset/promoter.gb	Wed Jun 11 09:32:59 2025 +0000
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+LOCUS       promoter                4361 bp    DNA     circular UNK 01-JAN-1980
+DEFINITION  
+ACCESSION   
+VERSION     
+SOURCE      
+  ORGANISM  
+COMMENT     Serial Cloner Genbank Format
+COMMENT     SerialCloner_Type=DNA
+COMMENT     SerialCloner_Comments=
+COMMENT     SerialCloner_Ends=0,0,,0,
+FEATURES             Location/Qualifiers
+     misc_feature    984..1028
+                     /label=Linker01
+                     /SerialCloner_Color=&h8000FF
+                     /SerialCloner_Show=True
+                     /SerialCloner_Protect=False
+                     /SerialCloner_Arrow=True
+     misc_feature    1168..1212
+                     /label=Linker02
+                     /SerialCloner_Color=&h8000FF
+                     /SerialCloner_Show=True
+                     /SerialCloner_Protect=False
+                     /SerialCloner_Arrow=True
+     misc_feature    1327..1361
+                     /label=PJ23105
+                     /SerialCloner_Color=&h84A4C0
+                     /SerialCloner_Show=True
+                     /SerialCloner_Protect=False
+                     /SerialCloner_Arrow=True
+     primer_bind     4295..4314
+                     /label=T7
+                     /SerialCloner_Color=&h008B8B
+                     /SerialCloner_Show=True
+                     /SerialCloner_Protect=False
+                     /SerialCloner_Arrow=True
+     rep_origin      complement(2161..2789)
+                     /label=ColE1 origin
+                     /SerialCloner_Color=&h4682B4
+                     /SerialCloner_Show=True
+                     /SerialCloner_Protect=False
+                     /SerialCloner_Arrow=True
+     CDS             complement(2941..3600)
+                     /label=AmpR
+                     /SerialCloner_Color=&h8FBC8F
+                     /SerialCloner_Show=True
+                     /SerialCloner_Protect=False
+                     /SerialCloner_Arrow=True
+     CDS             168..824
+                     /label=CmR
+                     /SerialCloner_Color=&h8FBC8F
+                     /SerialCloner_Show=True
+                     /SerialCloner_Protect=False
+                     /SerialCloner_Arrow=True
+     Promoter        complement(3840..3868)
+                     /label=Amp prom
+                     /SerialCloner_Color=&h4682B4
+                     /SerialCloner_Show=True
+                     /SerialCloner_Protect=False
+                     /SerialCloner_Arrow=True
+     misc_feature    1033..1161
+                     /label=terminator_B0015
+                     /SerialCloner_Color=&h84A4C0
+                     /SerialCloner_Show=True
+                     /SerialCloner_Protect=False
+                     /SerialCloner_Arrow=True
+     misc_feature    4295..4311
+                     /label=T7-promoter
+                     /SerialCloner_Color=&hFF00FF
+                     /SerialCloner_Show=True
+                     /SerialCloner_Protect=False
+                     /SerialCloner_Arrow=True
+     misc_feature    1..18
+                     /label=Prefix
+                     /SerialCloner_Color=&hFF0080
+                     /SerialCloner_Show=True
+                     /SerialCloner_Protect=False
+                     /SerialCloner_Arrow=True
+     misc_feature    1370..1387
+                     /label=Suffix
+                     /SerialCloner_Color=&hFF00FF
+                     /SerialCloner_Show=True
+                     /SerialCloner_Protect=False
+                     /SerialCloner_Arrow=True
+     misc_feature    3601..3797
+                     /label=pB1a promoter
+                     /SerialCloner_Color=&h84A4C0
+                     /SerialCloner_Show=True
+                     /SerialCloner_Protect=False
+                     /SerialCloner_Arrow=True
+     misc_feature    1327..1361
+                     /label=ANDERSON 024
+                     /SerialCloner_Color=&h84A4C0
+                     /SerialCloner_Show=True
+                     /SerialCloner_Protect=False
+                     /SerialCloner_Arrow=True
+ORIGIN
+        1 tctggtgggt ctctGTCCTT GATACCGGGA AGCCCTGGGC CAACTTTTGG CGAAAATGAG 
+       61 ACGTTGATCG GCACGTAAGA GGTTCCAACT TTCACCATAA TGAAATAAGA TCACTACCGG 
+      121 GCGTATTTTT TGAGTTATCG AGATTTTCAG GAGCTAAGGA AGCTAAAATG GAGAAAAAAA 
+      181 TCACTGGATA TACCACCGTT GATATATCCC AATGGCATCG TAAAGAACAT TTTGAGGCAT 
+      241 TTCAGTCAGT TGCTCAATGT ACCTATAACC AGACCGTTCA GCTGGATATT ACGGCCTTTT 
+      301 TAAAGACCGT AAAGAAAAAT AAGCACAAGT TTTATCCGGC CTTTATTCAC ATTCTTGCCC 
+      361 GCCTGATGAA TGCTCATCCG GAATTCCGTA TGGCAATGAA AGACGGTGAG CTGGTGATAT 
+      421 GGGATAGTGT TCACCCTTGT TACACCGTTT TCCATGAGCA AACTGAAACG TTTTCATCGC 
+      481 TCTGGAGTGA ATACCACGAC GATTTCCGGC AGTTTCTACA CATATATTCG CAAGATGTGG 
+      541 CGTGTTACGG TGAAAACCTG GCCTATTTCC CTAAAGGGTT TATTGAGAAT ATGTTTTTCG 
+      601 TCTCAGCCAA TCCCTGGGTG AGTTTCACCA GTTTTGATTT AAACGTGGCC AATATGGACA 
+      661 ACTTCTTCGC CCCCGTTTTC ACCATGGGCA AATATTATAC GCAAGGCGAC AAGGTGCTGA 
+      721 TGCCGCTGGC GATTCAGGTT CATCATGCCG TCTGTGATGG CTTCCATGTC GGCAGAATGC 
+      781 TTAATGAATT ACAACAGTAC TGCGATGAGT GGCAGGGCGG GGCGTAATTT TTTTAAGGCA 
+      841 GTTATTGGTG CCCTTAAACG CCTGGTGCTA CGCCTGAATA AGTGATAATA AGCGGATGAA 
+      901 TGGCAGAAAT TCGAAAGCAA ATTCGACCCG GTCGTCGGTT CAGGGCAGGG TCGTTAAATA 
+      961 GCCGCTTATG TCTATTGGGC TCGttactta cgacactccg agacagtcag agggtattta 
+     1021 ttgaactaGT CCCCAGGCAT CAAATAAAAC GAAAGGCTCA GTCGAAAGAC TGGGCCTTTC 
+     1081 GTTTTATCTG TTGTTTGTCG GTGAACGCTC TCTACTAGAG TCACACTGGC TCACCTTCGG 
+     1141 GTGGGCCTTT CTGCGTTTAT AGGCTCGATC GGTGTGAAAA GTCAGTATCC AGTCGTGTAG 
+     1201 TTCTTATTAC CTGTCCAGAC CTTTACGCCG CTGGAGACTA GTCACAGCTA ACACCACGTC 
+     1261 GTCCCTATCT GCTGCCCTAG GTCTATGAGT GGTTGCTGGA TAACGAATTC GCGGCCGCTT 
+     1321 CTAGAGTTTA CGGCTAGCTC AGTCCTAGGT ACTATGCTAG CTACTAGAGG GCTCGggaga 
+     1381 cctatcgATC TTTCTAGAAG ATCTCCTACA ATATTCTCAG CTGCCATGGA AAATCGATGT 
+     1441 TCTTCTTTTA TTCTCTCAAG ATTTTCAGGC TGTATATTAA AACTTATATT AAGAACTATG 
+     1501 CTAACCACCT CATCAGGAAC CGTTGTAGGT GGCGTGGGTT TTCTTGGCAA TCGACTCTCA 
+     1561 TGAAAACTAC GAGCTAAATA TTCAATATGT TCCTCTTGAC CAACTTTATT CTGCATTTTT 
+     1621 TTTGAACGAG GTTTAGAGCA AGCTTCAGGA AACTGAGACA GGAATTTTAT TAAAAATTTA 
+     1681 AATTTTGAAG AAAGTTCAGG GTTAATAGCA TCCATTTTTT GCTTTGCAAG TTCCTCAGCA 
+     1741 TTCTTAACAA AAGACGTCTC TTTTGACATG TTTAAAGTTT AAACCTCCTG TGTGAAATTA 
+     1801 TTATCCGCTC ATAATTCCAC ACATTATACG AGCCGGAAGC ATAAAGTGTA AAGCCTGGGG 
+     1861 TGCCTAATGA GTGAGCTAAC TCACATTAAT TGCGTTGCGC TCACTGCCAA TTGCTTTCCA 
+     1921 GTCGGGAAAC CTGTCGTGCC AGCTGCATTA ATGAATCGGC CAACGCGCGG GGAGAGGCGG 
+     1981 TTTGCGTATT GGGCGCTCTT CCGCTTCCTC GCTCACTGAC TCGCTGCGCT CGGTCGTTCG 
+     2041 GCTGCGGCGA GCGGTATCAG CTCACTCAAA GGCGGTAATA CGGTTATCCA CAGAATCAGG 
+     2101 GGATAACGCA GGAAAGAACA TGTGAGCAAA AGGCCAGCAA AAGGCCAGGA ACCGTAAAAA 
+     2161 GGCCGCGTTG CTGGCGTTTT TCCATAGGCT CCGCCCCCCT GACGAGCATC ACAAAAATCG 
+     2221 ACGCTCAAGT CAGAGGTGGC GAAACCCGAC AGGACTATAA AGATACCAGG CGTTTCCCCC 
+     2281 TGGAAGCTCC CTCGTGCGCT CTCCTGTTCC GACCCTGCCG CTTACCGGAT ACCTGTCCGC 
+     2341 CTTTCTCCCT TCGGGAAGCG TGGCGCTTTC TCATAGCTCA CGCTGTAGGT ATCTCAGTTC 
+     2401 GGTGTAGGTC GTTCGCTCCA AGCTGGGCTG TGTGCACGAA CCCCCCGTTC AGCCCGACCG 
+     2461 CTGCGCCTTA TCCGGTAACT ATCGTCTTGA GTCCAACCCG GTAAGACACG ACTTATCGCC 
+     2521 ACTGGCAGCA GCCACTGGTA ACAGGATTAG CAGAGCGAGG TATGTAGGCG GTGCTACAGA 
+     2581 GTTCTTGAAG TGGTGGCCTA ACTACGGCTA CACTAGAAGG ACAGTATTTG GTATCTGCGC 
+     2641 TCTGCTGAAG CCAGTTACCT TCGGAAAAAG AGTTGGTAGC TCTTGATCCG GCAAACAAAC 
+     2701 CACCGCTGGT AGCGGTGGTT TTTTTGTTTG CAAGCAGCAG ATTACGCGCA GAAAAAAAGG 
+     2761 ATCTCAAGAA GATCCTTTGA TCTTTTCTAC GGGGTCTGAC GCTCAGTGGA ACGAAAACTC 
+     2821 ACGTTAAGGG ATTTTGGTCA TGAGATTATC AAAAAGGATC TTCACCTAGA TCCTTTTAAA 
+     2881 TTAAAAATGA AGTTTTAAAT CAATCTAAAG TATATATGAG TAAACTTGGT CTGACAGTTA 
+     2941 CCAATGCTTA ATCAGTGAGG CACCTATCTC AGCGATCTGT CTATTTCGTT CATCCATAGT 
+     3001 TGCCTGACTC CCCGTCGTGT AGATAACTAC GATACGGGAG GGCTTACCAT CTGGCCCCAG 
+     3061 TGCTGCAATG ATACCGCGAG ACCCACGCTC ACCGGCTCCA GATTTATCAG CAATAAACCA 
+     3121 GCCAGCCGGA AGGGCCGAGC GCAGAAGTGG TCCTGCAACT TTATCCGCCT CCATCCAGTC 
+     3181 TATTAATTGT TGCCGGGAAG CTAGAGTAAG TAGTTCGCCA GTTAATAGTT TGCGCAACGT 
+     3241 TGTTGCCATT GCTACAGGCA TCGTGGTGTC ACGCTCGTCG TTTGGTATGG CTTCATTCAG 
+     3301 CTCCGGTTCC CAACGATCAA GGCGAGTTAC ATGATCCCCC ATGTTGTGCA AAAAAGCGGT 
+     3361 TAGCTCCTTC GGTCCTCCGA TCGTTGTCAG AAGTAAGTTG GCCGCAGTGT TATCACTCAT 
+     3421 GGTTATGGCA GCACTGCATA ATTCTCTTAC TGTCATGCCA TCCGTAAGAT GCTTTTCTGT 
+     3481 GACTGGTGAG TACTCAACCA AGTCATTCTG AGAATAGTGT ATGCGGCGAC CGAGTTGCTC 
+     3541 TTGCCCGGCG TCAATACGGG ATAATACCGC GCCACATAGC AGAACTTTAA AAGTGCTCAT 
+     3601 CATTGGAAAA CGTTCTTCGG GGCGAAAACT CTCAAGGATC TTACCGCTGT TGAGATCCAG 
+     3661 TTCGATGTAA CCCACTCGTG CACCCAACTG ATCTTCAGCA TCTTTTACTT TCACCAGCGT 
+     3721 TTCTGGGTGA GCAAAAACAG GAAGGCAAAA TGCCGCAAAA AAGGGAATAA GGGCGACACG 
+     3781 GAAATGTTGA ATACTCATAC TCTTCCTTTT TCAATATTAT TGAAGCATTT ATCAGGGTTA 
+     3841 TTGTCTCATG AGCGGATACA TATTTGAATG TATTTAGAAA AATAAACAAA TAGGGGTTCC 
+     3901 GCGCACATTT CCCCGAAAAG TGCCACCTGA CGTCTAAGAA ACCATTATTA TCATGACATT 
+     3961 AACCTATAAA AATAGGCGTA TCACGAGGCC GCCCCTGCAG CCGAATTATA TTATTTTTGC 
+     4021 CAAATAATTT TTAACAAAAG CTCTGAAGTC TTCTTCATTT AAATTCTTAG ATGATACTTC 
+     4081 ATCTGGAAAA TTGTCCCAAT TAGTAGCATC ACGCTGTGAG TAAGTTCTAA ACCATTTTTT 
+     4141 TATTGTTGTA TTATCTCTAA TCTTACTACT CGATGAGTTT TCGGTATTAT CTCTATTTTT 
+     4201 AACTTGGAGC AGGTTCCATT CATTGTTTTT TTCATCATAG TGAATAAAAT CAACTGCTTT 
+     4261 AACACTTGTG CCTGAACACC ATATCCATCC GGCGTAATAC GACTCACTAT AGGGAGAGCG 
+     4321 GCCGCCAGAT CTTCCGGATG GCTCGAGTTT TTCAGCAAGA T
+//
\ No newline at end of file