Mercurial > repos > tduigou > cloning_simulation
diff test-data/BioBrick_assembly_dataset/BBa_E0040_GFP.gb @ 0:3a3b0f7cb5c2 draft
planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/DnaCauldron/tree/master commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
| author | tduigou |
|---|---|
| date | Wed, 11 Jun 2025 09:32:59 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/BioBrick_assembly_dataset/BBa_E0040_GFP.gb Wed Jun 11 09:32:59 2025 +0000 @@ -0,0 +1,85 @@ +LOCUS BBa_E0040_GFP 2875 bp DNA circular UNK 01-JAN-1980 +DEFINITION . +ACCESSION BBa_E0040_GFP +VERSION BBa_E0040_GFP +KEYWORDS . +SOURCE . + ORGANISM . + . +FEATURES Location/Qualifiers + misc_feature 1..21 + /label="suffix" + misc_feature 22..93 + /label="E. coli his operon terminator" + stem_loop 30..64 + /label="terminator stem loop" + primer_bind 157..176 + /label="VR" + CDS 261..875 + /label="rep(pMB1) (rev)" + misc_feature 276 + /label="ORI" + CDS 1035..1895 + /label="ampR (rev)" + primer_bind 2018..2037 + /label="VF2" + misc_feature 2094..2097 + /label="end of terminator" + stem_loop 2107..2126 + /label="terminator stem loop" + misc_feature 2136..2157 + /label="prefix" + CDS 2156..2875 + /label="GFP protein" + misc_feature 2156..2875 + /label="BBa_E0040_GFP" +ORIGIN + 1 tactagtagc ggccgctgca gtccggcaaa aaagggcaag gtgtcaccac cctgcccttt + 61 ttctttaaaa ccgaaaagat tacttcgcgt tatgcaggct tcctcgctca ctgactcgct + 121 gcgctcggtc gttcggctgc ggcgagcggt atcagctcac tcaaaggcgg taatacggtt + 181 atccacagaa tcaggggata acgcaggaaa gaacatgtga gcaaaaggcc agcaaaaggc + 241 caggaaccgt aaaaaggccg cgttgctggc gtttttccac aggctccgcc cccctgacga + 301 gcatcacaaa aatcgacgct caagtcagag gtggcgaaac ccgacaggac tataaagata + 361 ccaggcgttt ccccctggaa gctccctcgt gcgctctcct gttccgaccc tgccgcttac + 421 cggatacctg tccgcctttc tcccttcggg aagcgtggcg ctttctcata gctcacgctg + 481 taggtatctc agttcggtgt aggtcgttcg ctccaagctg ggctgtgtgc acgaaccccc + 541 cgttcagccc gaccgctgcg ccttatccgg taactatcgt cttgagtcca acccggtaag + 601 acacgactta tcgccactgg cagcagccac tggtaacagg attagcagag cgaggtatgt + 661 aggcggtgct acagagttct tgaagtggtg gcctaactac ggctacacta gaagaacagt + 721 atttggtatc tgcgctctgc tgaagccagt taccttcgga aaaagagttg gtagctcttg + 781 atccggcaaa caaaccaccg ctggtagcgg tggttttttt gtttgcaagc agcagattac + 841 gcgcagaaaa aaaggatctc aagaagatcc tttgatcttt tctacggggt ctgacgctca + 901 gtggaacgaa aactcacgtt aagggatttt ggtcatgaga ttatcaaaaa ggatcttcac + 961 ctagatcctt ttaaattaaa aatgaagttt taaatcaatc taaagtatat atgagtaaac + 1021 ttggtctgac agttaccaat gcttaatcag tgaggcacct atctcagcga tctgtctatt + 1081 tcgttcatcc atagttgcct gactccccgt cgtgtagata actacgatac gggagggctt + 1141 accatctggc cccagtgctg caatgatacc gcgagaccca cgctcaccgg ctccagattt + 1201 atcagcaata aaccagccag ccggaagggc cgagcgcaga agtggtcctg caactttatc + 1261 cgcctccatc cagtctatta attgttgccg ggaagctaga gtaagtagtt cgccagttaa + 1321 tagtttgcgc aacgttgttg ccattgctac aggcatcgtg gtgtcacgct cgtcgtttgg + 1381 tatggcttca ttcagctccg gttcccaacg atcaaggcga gttacatgat cccccatgtt + 1441 gtgcaaaaaa gcggttagct ccttcggtcc tccgatcgtt gtcagaagta agttggccgc + 1501 agtgttatca ctcatggtta tggcagcact gcataattct cttactgtca tgccatccgt + 1561 aagatgcttt tctgtgactg gtgagtactc aaccaagtca ttctgagaat agtgtatgcg + 1621 gcgaccgagt tgctcttgcc cggcgtcaat acgggataat accgcgccac atagcagaac + 1681 tttaaaagtg ctcatcattg gaaaacgttc ttcggggcga aaactctcaa ggatcttacc + 1741 gctgttgaga tccagttcga tataacccac tcgtgcaccc aactgatctt cagcatcttt + 1801 tactttcacc agcgtttctg ggtgagcaaa aacaggaagg caaaatgccg caaaaaaggg + 1861 aataagggcg acacggaaat gttgaatact catactcttc ctttttcaat attattgaag + 1921 catttatcag ggttattgtc tcatgagcgg atacatattt gaatgtattt agaaaaataa + 1981 acaaataggg gttccgcgca catttccccg aaaagtgcca cctgacgtct aagaaaccat + 2041 tattatcatg acattaacct ataaaaatag gcgtatcacg aggcagaatt tcagataaaa + 2101 aaaatcctta gctttcgcta aggatgattt ctggaattcg cggccgcttc tagagatgcg + 2161 taaaggagaa gaacttttca ctggagttgt cccaattctt gttgaattag atggtgatgt + 2221 taatgggcac aaattttctg tcagtggaga gggtgaaggt gatgcaacat acggaaaact + 2281 tacccttaaa tttatttgca ctactggaaa actacctgtt ccatggccaa cacttgtcac + 2341 tactttcggt tatggtgttc aatgctttgc gagataccca gatcatatga aacagcatga + 2401 ctttttcaag agtgccatgc ccgaaggtta tgtacaggaa agaactatat ttttcaaaga + 2461 tgacgggaac tacaagacac gtgctgaagt caagtttgaa ggtgataccc ttgttaatag + 2521 aatcgagtta aaaggtattg attttaaaga agatggaaac attcttggac acaaattgga + 2581 atacaactat aactcacaca atgtatacat catggcagac aaacaaaaga atggaatcaa + 2641 agttaacttc aaaattagac acaacattga agatggaagc gttcaactag cagaccatta + 2701 tcaacaaaat actccaattg gcgatggccc tgtcctttta ccagacaacc attacctgtc + 2761 cacacaatct gccctttcga aagatcccaa cgaaaagaga gaccacatgg tccttcttga + 2821 gtttgtaaca gctgctggga ttacacatgg catggatgaa ctatacaaat aataa +//
