Mercurial > repos > tduigou > dnabot

comparison dnabot.xml @ 1:de6812daba39 draft

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"planemo upload commit f40274f6b9f6a15eb4022aab21286d4c96cd8475-dirty"
author tduigou
date Tue, 22 Feb 2022 13:43:44 +0000
parents 6d55c77a17ab
children aeebb663a0d9
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0:6d55c77a17ab 1:de6812daba39
1 <tool id="dnabot" name="DNA-Bot" version="3.0.0"> 1 <tool id="dnabot" name="DNA-Bot" version="@TOOL_VERSION@" profile="19.09">
2 <description>DNA assembly using BASIC on OpenTrons</description> 2 <description>DNA assembly using BASIC on OpenTrons</description>
3 <macros>
4 <token name="@TOOL_VERSION@">3.1.0</token>
5 </macros>
3 <requirements> 6 <requirements>
4 <requirement type="package" version="3.0.0">dnabot</requirement> 7 <requirement type="package" version="@TOOL_VERSION@">dnabot</requirement>
5 </requirements> 8 </requirements>
6 <command detect_errors="exit_code"><![CDATA[ 9 <command detect_errors="exit_code"><![CDATA[
7 python -m dnabot.dnabot_app 10 python -m dnabot.dnabot_app
8 #if $adv.default_settings_file 11 #if $adv.default_settings_file
9 --default_settings_file '$adv.default_settings_file' 12 --default_settings_file '$adv.default_settings_file'
10 #end if 13 #end if
83 * **output_dir**: (string) Output directory. Default: same directory than the one containing the "construct_path" file. 86 * **output_dir**: (string) Output directory. Default: same directory than the one containing the "construct_path" file.
84 87
85 Version 88 Version
86 ------- 89 -------
87 90
88 3.0.0 91 3.1.0
89 92
90 Authors 93 Authors
91 ------- 94 -------
92 95
93 * **Matthew C Haines** 96 * **Matthew C Haines**
104 107
105 * Marko Storch 108 * Marko Storch
106 * Geoff Baldwin 109 * Geoff Baldwin
107 ]]></help> 110 ]]></help>
108 <citations> 111 <citations>
109 <citation type="bibtex"> 112 <citation type="doi">10.1093/synbio/ysaa010</citation>
110 @article{10.1093/synbio/ysaa010,
111 author = {Storch, Marko and Haines, Matthew C and Baldwin, Geoff S},
112 title = {DNA-BOT: a low-cost, automated DNA assembly platform for synthetic biology},
113 journal = {Synthetic Biology},
114 volume = {5},
115 number = {1},
116 year = {2020},
117 month = {07},
118 issn = {2397-7000},
119 doi = {10.1093/synbio/ysaa010},
120 url = {https://doi.org/10.1093/synbio/ysaa010},
121 note = {ysaa010},
122 eprint = {https://academic.oup.com/synbio/article-pdf/5/1/ysaa010/33722340/ysaa010.pdf},
123 }
124 </citation>
125 </citations> 113 </citations>
126 </tool> 114 </tool>