Mercurial > repos > tduigou > doe_synbio_sampler

comparison sampler.xml @ 4:d69cb64336e7 draft

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planemo upload for repository ['https://github.com/brsynth/icfree-ml', 'https://github.com/pablocarb/doebase'] commit 537d7fefe58984b8f7ca66010153a2fdc35ddf4b
author tduigou
date Wed, 14 Feb 2024 15:24:19 +0000
parents 0111a6eb7b98
children 5e7468a35380
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3:0111a6eb7b98 4:d69cb64336e7
1 <tool id="doe_synbio_sampler" name="iCFree sampler" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" license="@LICENCE@"> 1 <tool id="doe_synbio_sampler" name="iCFree sampler" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" license="@LICENCE@">
2 <description>Generate data points using latin hypercube sampling (LHS)</description> 2 <description>Generate data points using latin hypercube sampling (LHS)</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 <token name="@TOOL_VERSION@">2.1.1</token> 5 <token name="@TOOL_VERSION@">2.2.0</token>
6 </macros> 6 </macros>
7 <requirements> 7 <requirements>
8 <requirement type="package" version="@TOOL_VERSION@">icfree</requirement> 8 <requirement type="package" version="@TOOL_VERSION@">icfree</requirement>
9 </requirements> 9 </requirements>
10 <expand macro="stdio"/> 10 <expand macro="stdio"/>
51 <data name="output_sampling" format="tabular" label="${tool.name}" /> 51 <data name="output_sampling" format="tabular" label="${tool.name}" />
52 </outputs> 52 </outputs>
53 <tests> 53 <tests>
54 <!-- test 1: check if identical outputs are produced with default parameters --> 54 <!-- test 1: check if identical outputs are produced with default parameters -->
55 <test> 55 <test>
56 <param name="cfps_file" value="converter_proCFPS_parameters.tsv" /> 56 <param name="cfps_file" value="sampler/input/parameters.tsv" />
57 <param name="seed_param" value="not_random" /> 57 <param name="seed_param" value="not_random" />
58 <param name="seed" value="0" /> 58 <param name="seed" value="0" />
59 <output name="output_sampling" file="sampler_sampling.test-1.tsv" ftype="tabular" compare="diff" /> 59 <output name="output_sampling" file="sampler/output/sampling.test-1.tsv" ftype="tabular" compare="diff" />
60 </test> 60 </test>
61 <!-- test 2: advanced arguments --> 61 <!-- test 2: advanced arguments -->
62 <test> 62 <test>
63 <param name="cfps_file" value="converter_proCFPS_parameters.tsv" /> 63 <param name="cfps_file" value="sampler/input/parameters.tsv" />
64 <param name="nb_sampling_steps" value="3" /> 64 <param name="nb_sampling_steps" value="3" />
65 <param name="nb_samples" value="100" /> 65 <param name="nb_samples" value="100" />
66 <param name="sampling_ratio" value="0.4 0.2 0.3" /> 66 <param name="sampling_ratio" value="0.4 0.2 0.3" />
67 <param name="seed_param" value="not_random" /> 67 <param name="seed_param" value="not_random" />
68 <param name="seed" value="0" /> 68 <param name="seed" value="0" />
69 <param name="nb_samples" value="100" /> 69 <output name="output_sampling" file="sampler/output/sampling.test-2.tsv" ftype="tabular" compare="diff" />
70 <output name="output_sampling" file="sampler_sampling.test-2.tsv" ftype="tabular" compare="diff" />
71 </test> 70 </test>
72 </tests> 71 </tests>
73 <help><![CDATA[ 72 <help><![CDATA[
74 Sampler 73 Sampler
75 ======= 74 =======