Mercurial > repos > tduigou > genetic_design_workflow

annotate Genetic_Design_Workflow.ga @ 0:0cf30759d085 draft

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"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
author tduigou
date Tue, 21 Dec 2021 13:15:48 +0000
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1 {
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2 "a_galaxy_workflow": "true",
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3 "annotation": "",
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4 "format-version": "0.1",
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5 "name": "Genetic_Design_Workflow",
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6 "steps": {
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7 "0": {
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13 "inputs": [
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14 {
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15 "description": "",
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16 "name": "SBML Pathway"
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17 }
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18 ],
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19 "label": "SBML Pathway",
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20 "name": "Input dataset",
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21 "outputs": [],
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60 {
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61 "name": "uniprot_ids",
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62 "type": "xml"
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64 {
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65 "name": "uniprot_ids_csv",
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80 "tool_id": "toolshed.g2.bx.psu.edu/repos/tduigou/selenzy/selenzy-wrapper/0.1.0",
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81 "tool_shed_repository": {
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83 "name": "selenzy",
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84 "owner": "tduigou",
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85 "tool_shed": "toolshed.g2.bx.psu.edu"
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86 },
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87 "tool_state": "{\"adv\": {\"nb_ids\": \"-1\", \"nb_targets\": \"500\", \"direction\": \"0.0\", \"NoMSA\": \"true\", \"taxonIDs\": \"83333\"}, \"pathway\": {\"__class__\": \"ConnectedValue\"}, \"__page__\": null, \"__rerun_remap_job_id__\": null}",
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88 "tool_version": "0.1.0",
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89 "type": "tool",
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91 "workflow_outputs": [
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92 {
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93 "label": "Uniprot IDs",
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94 "output_name": "uniprot_ids",
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97 {
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98 "label": "Uniprot IDs",
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99 "output_name": "uniprot_ids_csv",
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101 }
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102 ]
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103 },
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109 "input_connections": {
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110 "sbml_single_input": {
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111 "id": 1,
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112 "output_name": "uniprot_ids"
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113 }
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114 },
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115 "inputs": [],
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118 "outputs": [
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119 {
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122 }
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123 ],
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133 },
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141 },
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147 {
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163 }
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164 },
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169 }
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174 {
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177 }
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178 ],
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196 },
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197 "tool_state": "{\"adv\": {\"url\": \"https://partsgenie.micalis.inrae.fr\"}, \"enzymes_file\": {\"__class__\": \"RuntimeValue\"}, \"taxonomy_id\": \"83333\", \"__page__\": null, \"__rerun_remap_job_id__\": null}",
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202 {
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203 "label": "Parts",
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208 },
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218 },
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222 }
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223 },
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225 {
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228 }
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229 ],
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233 {
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236 }
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237 ],
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356 "tool_state": "{\"LCR_input\": {\"__class__\": \"ConnectedValue\"}, \"adv\": {\"melting_temp\": \"60.0\"}, \"__page__\": null, \"__rerun_remap_job_id__\": null}",
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357 "tool_version": "1.0.1",
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358 "type": "tool",
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359 "uuid": "14974d0a-257e-4cba-8bea-37367638750e",
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360 "workflow_outputs": [
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361 {
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362 "label": "LCR Genie: Assembly Plan",
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363 "output_name": "LCR_output",
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364 "uuid": "ba05b6d0-a81f-496f-925b-bc2a9e014eac"
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365 }
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366 ]
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367 }
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368 },
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369 "tags": [],
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370 "uuid": "156b3f3d-9925-48fc-bb22-cfff50584c3e",
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371 "version": 6
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372 }