Mercurial > repos > tduigou > get_sbml_model

diff get_sbml_model.xml @ 4:1482291aaa5c draft

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planemo upload for repository https://github.com/brsynth/synbiocad-galaxy-wrappers commit 4a0b08beb8cdf51ab295a1f5f8c586d6bbaf5586
author tduigou
date Mon, 22 May 2023 14:57:40 +0000
parents f59e65c1606a
children 80c32f0cb716
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--- a/get_sbml_model.xml	Sat Apr 29 16:44:33 2023 +0000
+++ b/get_sbml_model.xml	Mon May 22 14:57:40 2023 +0000
@@ -4,12 +4,17 @@
         <requirement type="package" version="7.81.0">curl</requirement>
         <requirement type="package" version="1.11">gzip</requirement>
         <requirement type="package" version="5.19.2">python-libsbml</requirement>
-        <requirement type="package" version="5.19.2">requests</requirement>
+        <requirement type="package" version="2.29">requests</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
         curl -o - 'http://bigg.ucsd.edu/static/models/$(input).xml.gz'
         | gunzip > '$model';
-        python '$__tool_directory__/'get_infos.py '$model' --hostid '$input' --comp '$compartments' --biomass '$biomass' --taxid '$taxid'
+        python '$__tool_directory__/'get_infos.py
+        '$model'
+        --hostid '$input'
+        --comp '$compartments'
+        --biomass '$biomass'
+        --taxid '$taxid'
     ]]></command>
     <inputs>
         <param name="input" type="select" label="Strain">