Mercurial > repos > tduigou > get_sbml_model
view test-data/e_coli_core.xml @ 9:6a2871e89352 draft default tip
planemo upload for repository https://github.com/brsynth/synbiocad-galaxy-wrappers commit 537d7fefe58984b8f7ca66010153a2fdc35ddf4b
| author | tduigou |
|---|---|
| date | Wed, 14 Feb 2024 15:25:38 +0000 |
| parents | 9b5947d48192 |
| children |
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<?xml version='1.0' encoding='UTF-8'?> <sbml xmlns:fbc="http://www.sbml.org/sbml/level3/version1/fbc/version2" xmlns="http://www.sbml.org/sbml/level3/version1/core" level="3" version="1" sboTerm="SBO:0000624" fbc:required="false"> <model fbc:strict="true" id="e_coli_core"> <listOfUnitDefinitions> <unitDefinition id="mmol_per_gDW_per_hr"> <listOfUnits> <unit kind="mole" scale="-3" multiplier="1" exponent="1"/> <unit kind="gram" scale="0" multiplier="1" exponent="-1"/> <unit kind="second" scale="0" multiplier="3600" exponent="-1"/> </listOfUnits> </unitDefinition> </listOfUnitDefinitions> <fbc:listOfObjectives fbc:activeObjective="obj"> <fbc:objective fbc:id="obj" fbc:type="maximize"> <fbc:listOfFluxObjectives> <fbc:fluxObjective fbc:reaction="R_BIOMASS_Ecoli_core_w_GAM" fbc:coefficient="1"/> </fbc:listOfFluxObjectives> </fbc:objective> </fbc:listOfObjectives> <listOfParameters> <parameter value="-1000" id="cobra_default_lb" sboTerm="SBO:0000626" constant="true" units="mmol_per_gDW_per_hr"/> <parameter value="1000" id="cobra_default_ub" sboTerm="SBO:0000626" constant="true" units="mmol_per_gDW_per_hr"/> <parameter value="0" id="cobra_0_bound" sboTerm="SBO:0000626" constant="true" units="mmol_per_gDW_per_hr"/> <parameter id="R_ATPM_lower_bound" value="8.39" sboTerm="SBO:0000625" constant="true" units="mmol_per_gDW_per_hr"/> <parameter id="R_EX_glc__D_e_lower_bound" value="-10" sboTerm="SBO:0000625" constant="true" units="mmol_per_gDW_per_hr"/> </listOfParameters> <listOfCompartments> <compartment id="e" name="extracellular space" constant="true"/> <compartment id="c" name="cytosol" constant="true"/> </listOfCompartments> <listOfSpecies> <species id="M_glc__D_e" constant="false" boundaryCondition="false" hasOnlySubstanceUnits="false" name="D-Glucose" metaid="M_glc__D_e" sboTerm="SBO:0000247" compartment="e" fbc:charge="0" fbc:chemicalFormula="C6H12O6"> <sbml:annotation xmlns:sbml="http://www.sbml.org/sbml/level3/version1/core"> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"> <rdf:Description rdf:about="#M_glc__D_e"> <bqbiol:is xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/bigg.metabolite/glc__D"/> <rdf:li rdf:resource="http://identifiers.org/biocyc/META:Glucopyranose"/> <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:12965"/> <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:20999"/> <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:4167"/> <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:17634"/> <rdf:li rdf:resource="http://identifiers.org/hmdb/HMDB00122"/> <rdf:li rdf:resource="http://identifiers.org/hmdb/HMDB06564"/> <rdf:li rdf:resource="http://identifiers.org/inchi_key/WQZGKKKJIJFFOK-GASJEMHNSA-N"/> <rdf:li rdf:resource="http://identifiers.org/kegg.compound/C00031"/> <rdf:li rdf:resource="http://identifiers.org/kegg.drug/D00009"/> <rdf:li rdf:resource="http://identifiers.org/metanetx.chemical/MNXM41"/> <rdf:li rdf:resource="http://identifiers.org/sabiork/1406"/> <rdf:li rdf:resource="http://identifiers.org/sabiork/1407"/> <rdf:li rdf:resource="http://identifiers.org/seed.compound/cpd26821"/> <rdf:li rdf:resource="http://identifiers.org/seed.compound/cpd00027"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </sbml:annotation> </species> <species id="M_gln__L_c" constant="false" boundaryCondition="false" hasOnlySubstanceUnits="false" name="L-Glutamine" metaid="M_gln__L_c" sboTerm="SBO:0000247" compartment="c" fbc:charge="0" fbc:chemicalFormula="C5H10N2O3"> <sbml:annotation xmlns:sbml="http://www.sbml.org/sbml/level3/version1/core"> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"> <rdf:Description rdf:about="#M_gln__L_c"> <bqbiol:is xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/bigg.metabolite/gln__L"/> <rdf:li rdf:resource="http://identifiers.org/biocyc/META:GLN"/> <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:42943"/> <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:42899"/> <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:32679"/> <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:32678"/> <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:58359"/> <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:28300"/> <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:42812"/> <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:13110"/> <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:18050"/> <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:32666"/> <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:6227"/> <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:32665"/> <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:21308"/> <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:42814"/> <rdf:li 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rdf:resource="http://identifiers.org/seed.compound/cpd00053"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </sbml:annotation> </species> <species id="M_gln__L_e" constant="false" boundaryCondition="false" hasOnlySubstanceUnits="false" name="L-Glutamine" metaid="M_gln__L_e" sboTerm="SBO:0000247" compartment="e" fbc:charge="0" fbc:chemicalFormula="C5H10N2O3"> <sbml:annotation xmlns:sbml="http://www.sbml.org/sbml/level3/version1/core"> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"> <rdf:Description rdf:about="#M_gln__L_e"> <bqbiol:is xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/bigg.metabolite/gln__L"/> <rdf:li rdf:resource="http://identifiers.org/biocyc/META:GLN"/> <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:42943"/> <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:42899"/> <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:32679"/> <rdf:li 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<rdf:li rdf:resource="http://identifiers.org/kegg.compound/C00064"/> <rdf:li rdf:resource="http://identifiers.org/kegg.compound/C00303"/> <rdf:li rdf:resource="http://identifiers.org/kegg.drug/D00015"/> <rdf:li rdf:resource="http://identifiers.org/metanetx.chemical/MNXM37"/> <rdf:li rdf:resource="http://identifiers.org/reactome.compound/113522"/> <rdf:li rdf:resource="http://identifiers.org/reactome.compound/212615"/> <rdf:li rdf:resource="http://identifiers.org/reactome.compound/29472"/> <rdf:li rdf:resource="http://identifiers.org/sabiork/2011"/> <rdf:li rdf:resource="http://identifiers.org/sabiork/74"/> <rdf:li rdf:resource="http://identifiers.org/seed.compound/cpd00253"/> <rdf:li rdf:resource="http://identifiers.org/seed.compound/cpd00053"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </sbml:annotation> </species> <species id="M_glu__L_c" constant="false" boundaryCondition="false" hasOnlySubstanceUnits="false" name="L-Glutamate" metaid="M_glu__L_c" sboTerm="SBO:0000247" 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<rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:13107"/> <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:5431"/> <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:21304"/> <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:6224"/> <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:14321"/> <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:29988"/> <rdf:li rdf:resource="http://identifiers.org/hmdb/HMDB00148"/> <rdf:li rdf:resource="http://identifiers.org/hmdb/HMDB60475"/> <rdf:li rdf:resource="http://identifiers.org/inchi_key/WHUUTDBJXJRKMK-VKHMYHEASA-M"/> <rdf:li rdf:resource="http://identifiers.org/kegg.compound/C00025"/> <rdf:li rdf:resource="http://identifiers.org/kegg.compound/C00302"/> <rdf:li rdf:resource="http://identifiers.org/kegg.drug/D00007"/> <rdf:li rdf:resource="http://identifiers.org/kegg.drug/D04341"/> <rdf:li rdf:resource="http://identifiers.org/metanetx.chemical/MNXM89557"/> <rdf:li 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rdf:about="#R_NADH16"> <bqbiol:is xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/bigg.reaction/NADH16"/> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.6.5.3"/> <rdf:li rdf:resource="http://identifiers.org/metanetx.reaction/MNXR101864"/> <rdf:li rdf:resource="http://identifiers.org/seed.reaction/rxn08972"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </sbml:annotation> <listOfReactants> <speciesReference species="M_h_c" stoichiometry="4" constant="true"/> <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/> <speciesReference species="M_q8_c" stoichiometry="1" constant="true"/> </listOfReactants> <listOfProducts> <speciesReference species="M_h_e" stoichiometry="3" constant="true"/> <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/> <speciesReference species="M_q8h2_c" stoichiometry="1" constant="true"/> </listOfProducts> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="G_b2276"/> <fbc:geneProductRef fbc:geneProduct="G_b2277"/> <fbc:geneProductRef fbc:geneProduct="G_b2278"/> <fbc:geneProductRef fbc:geneProduct="G_b2279"/> <fbc:geneProductRef fbc:geneProduct="G_b2280"/> <fbc:geneProductRef fbc:geneProduct="G_b2281"/> <fbc:geneProductRef fbc:geneProduct="G_b2282"/> <fbc:geneProductRef fbc:geneProduct="G_b2283"/> <fbc:geneProductRef fbc:geneProduct="G_b2284"/> <fbc:geneProductRef fbc:geneProduct="G_b2285"/> <fbc:geneProductRef fbc:geneProduct="G_b2286"/> <fbc:geneProductRef fbc:geneProduct="G_b2287"/> <fbc:geneProductRef fbc:geneProduct="G_b2288"/> </fbc:and> </fbc:geneProductAssociation> </reaction> <reaction id="R_NADTRHD" fast="false" reversible="false" name="NAD transhydrogenase" metaid="R_NADTRHD" sboTerm="SBO:0000176" fbc:upperFluxBound="cobra_default_ub" fbc:lowerFluxBound="cobra_0_bound"> <sbml:annotation xmlns:sbml="http://www.sbml.org/sbml/level3/version1/core"> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"> <rdf:Description rdf:about="#R_NADTRHD"> <bqbiol:is xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/bigg.reaction/NADTRHD"/> <rdf:li rdf:resource="http://identifiers.org/biocyc/META:PYRNUTRANSHYDROGEN-RXN"/> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.6.1.3"/> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.6.1.2"/> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.6.1.1"/> <rdf:li rdf:resource="http://identifiers.org/kegg.reaction/R00112"/> <rdf:li rdf:resource="http://identifiers.org/metanetx.reaction/MNXR101898"/> <rdf:li rdf:resource="http://identifiers.org/rhea/11692"/> <rdf:li rdf:resource="http://identifiers.org/rhea/11695"/> <rdf:li rdf:resource="http://identifiers.org/rhea/11694"/> <rdf:li rdf:resource="http://identifiers.org/rhea/11693"/> <rdf:li rdf:resource="http://identifiers.org/seed.reaction/rxn00083"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </sbml:annotation> <listOfReactants> <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/> <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/> </listOfReactants> <listOfProducts> <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/> <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/> </listOfProducts> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="G_b3962"/> <fbc:and> <fbc:geneProductRef fbc:geneProduct="G_b1602"/> <fbc:geneProductRef fbc:geneProduct="G_b1603"/> </fbc:and> </fbc:or> </fbc:geneProductAssociation> </reaction> <reaction id="R_NH4t" fast="false" reversible="true" name="Ammonia reversible transport" metaid="R_NH4t" sboTerm="SBO:0000185" fbc:upperFluxBound="cobra_default_ub" fbc:lowerFluxBound="cobra_default_lb"> <sbml:annotation xmlns:sbml="http://www.sbml.org/sbml/level3/version1/core"> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"> <rdf:Description rdf:about="#R_NH4t"> <bqbiol:is xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/bigg.reaction/NH4t"/> <rdf:li rdf:resource="http://identifiers.org/biocyc/META:TRANS-RXN0-206"/> <rdf:li rdf:resource="http://identifiers.org/biocyc/META:RXN-9615"/> <rdf:li rdf:resource="http://identifiers.org/biocyc/META:TRANS-RXN0-544"/> <rdf:li rdf:resource="http://identifiers.org/metanetx.reaction/MNXR101950"/> <rdf:li rdf:resource="http://identifiers.org/reactome.reaction/R-CEL-444416"/> <rdf:li rdf:resource="http://identifiers.org/reactome.reaction/R-SSC-444416"/> <rdf:li rdf:resource="http://identifiers.org/reactome.reaction/R-DDI-444416"/> <rdf:li rdf:resource="http://identifiers.org/reactome.reaction/R-MMU-444416"/> <rdf:li rdf:resource="http://identifiers.org/reactome.reaction/R-DRE-444416"/> <rdf:li rdf:resource="http://identifiers.org/reactome.reaction/R-GGA-444416"/> <rdf:li rdf:resource="http://identifiers.org/reactome.reaction/R-CFA-444416"/> <rdf:li rdf:resource="http://identifiers.org/reactome.reaction/R-HSA-444416"/> <rdf:li rdf:resource="http://identifiers.org/reactome.reaction/R-XTR-444416"/> <rdf:li rdf:resource="http://identifiers.org/reactome.reaction/R-BTA-444416"/> <rdf:li rdf:resource="http://identifiers.org/reactome.reaction/R-RNO-444416"/> <rdf:li rdf:resource="http://identifiers.org/reactome.reaction/R-TGU-444416"/> <rdf:li rdf:resource="http://identifiers.org/reactome.reaction/R-DME-444416"/> <rdf:li rdf:resource="http://identifiers.org/rhea/28749"/> <rdf:li rdf:resource="http://identifiers.org/rhea/28748"/> <rdf:li rdf:resource="http://identifiers.org/rhea/28750"/> <rdf:li rdf:resource="http://identifiers.org/rhea/28747"/> <rdf:li rdf:resource="http://identifiers.org/sabiork/11683"/> <rdf:li rdf:resource="http://identifiers.org/seed.reaction/rxn13364"/> <rdf:li rdf:resource="http://identifiers.org/seed.reaction/rxn09835"/> <rdf:li rdf:resource="http://identifiers.org/seed.reaction/rxn05466"/> <rdf:li rdf:resource="http://identifiers.org/seed.reaction/rxn08987"/> <rdf:li rdf:resource="http://identifiers.org/seed.reaction/rxn08986"/> <rdf:li rdf:resource="http://identifiers.org/seed.reaction/rxn09736"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </sbml:annotation> <listOfReactants> <speciesReference species="M_nh4_e" stoichiometry="1" constant="true"/> </listOfReactants> <listOfProducts> <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/> </listOfProducts> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="G_s0001"/> <fbc:geneProductRef fbc:geneProduct="G_b0451"/> </fbc:or> </fbc:geneProductAssociation> </reaction> <reaction id="R_O2t" fast="false" reversible="true" name="O2 transport diffusion " metaid="R_O2t" sboTerm="SBO:0000185" fbc:upperFluxBound="cobra_default_ub" fbc:lowerFluxBound="cobra_default_lb"> <sbml:annotation xmlns:sbml="http://www.sbml.org/sbml/level3/version1/core"> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"> <rdf:Description rdf:about="#R_O2t"> <bqbiol:is xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/bigg.reaction/O2t"/> <rdf:li rdf:resource="http://identifiers.org/biocyc/META:TRANS-RXN0-474"/> <rdf:li rdf:resource="http://identifiers.org/metanetx.reaction/MNXR102090"/> <rdf:li rdf:resource="http://identifiers.org/seed.reaction/rxn09641"/> <rdf:li rdf:resource="http://identifiers.org/seed.reaction/rxn05468"/> <rdf:li rdf:resource="http://identifiers.org/seed.reaction/rxn09031"/> <rdf:li rdf:resource="http://identifiers.org/seed.reaction/rxn09032"/> <rdf:li rdf:resource="http://identifiers.org/seed.reaction/rxn09734"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </sbml:annotation> <listOfReactants> <speciesReference species="M_o2_e" stoichiometry="1" constant="true"/> </listOfReactants> <listOfProducts> <speciesReference species="M_o2_c" stoichiometry="1" constant="true"/> </listOfProducts> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="G_s0001"/> </fbc:geneProductAssociation> </reaction> <reaction id="R_PDH" fast="false" reversible="false" name="Pyruvate dehydrogenase" metaid="R_PDH" sboTerm="SBO:0000176" fbc:upperFluxBound="cobra_default_ub" fbc:lowerFluxBound="cobra_0_bound"> <sbml:annotation xmlns:sbml="http://www.sbml.org/sbml/level3/version1/core"> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"> <rdf:Description rdf:about="#R_PDH"> <bqbiol:is xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/bigg.reaction/PDH"/> <rdf:li rdf:resource="http://identifiers.org/biocyc/META:PYRUVDEH-RXN"/> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.2.1"/> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.8.1.4"/> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.2.1.51"/> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.2.4.1"/> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.12"/> <rdf:li rdf:resource="http://identifiers.org/kegg.reaction/R00209"/> <rdf:li rdf:resource="http://identifiers.org/metanetx.reaction/MNXR102425"/> <rdf:li rdf:resource="http://identifiers.org/reactome.reaction/R-RNO-71397"/> <rdf:li rdf:resource="http://identifiers.org/reactome.reaction/R-OSA-71397"/> <rdf:li rdf:resource="http://identifiers.org/reactome.reaction/R-GGA-373177"/> <rdf:li rdf:resource="http://identifiers.org/reactome.reaction/R-DME-71397"/> <rdf:li rdf:resource="http://identifiers.org/reactome.reaction/R-TGU-71397"/> <rdf:li rdf:resource="http://identifiers.org/reactome.reaction/R-XTR-71397"/> <rdf:li rdf:resource="http://identifiers.org/reactome.reaction/R-CFA-71397"/> <rdf:li rdf:resource="http://identifiers.org/reactome.reaction/R-BTA-71397"/> <rdf:li rdf:resource="http://identifiers.org/reactome.reaction/R-HSA-71397"/> <rdf:li rdf:resource="http://identifiers.org/reactome.reaction/R-GGA-71397"/> <rdf:li rdf:resource="http://identifiers.org/reactome.reaction/R-SPO-71397"/> <rdf:li rdf:resource="http://identifiers.org/reactome.reaction/R-CEL-71397"/> <rdf:li rdf:resource="http://identifiers.org/reactome.reaction/R-DDI-71397"/> <rdf:li rdf:resource="http://identifiers.org/reactome.reaction/R-DRE-71397"/> <rdf:li rdf:resource="http://identifiers.org/reactome.reaction/R-SSC-71397"/> <rdf:li rdf:resource="http://identifiers.org/reactome.reaction/R-SCE-71397"/> <rdf:li rdf:resource="http://identifiers.org/reactome.reaction/R-ATH-71397"/> <rdf:li rdf:resource="http://identifiers.org/reactome.reaction/R-MMU-71397"/> <rdf:li rdf:resource="http://identifiers.org/rhea/28043"/> <rdf:li rdf:resource="http://identifiers.org/rhea/28045"/> <rdf:li rdf:resource="http://identifiers.org/rhea/28044"/> <rdf:li rdf:resource="http://identifiers.org/rhea/28042"/> <rdf:li rdf:resource="http://identifiers.org/sabiork/523"/> <rdf:li rdf:resource="http://identifiers.org/seed.reaction/rxn00154"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </sbml:annotation> <listOfReactants> <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/> <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/> <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/> </listOfReactants> <listOfProducts> <speciesReference species="M_accoa_c" stoichiometry="1" constant="true"/> <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/> <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/> </listOfProducts> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="G_b0114"/> <fbc:geneProductRef fbc:geneProduct="G_b0115"/> <fbc:geneProductRef fbc:geneProduct="G_b0116"/> </fbc:and> </fbc:geneProductAssociation> </reaction> </listOfReactions> </model> </sbml>