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comparison instructor.xml @ 6:39f049e5b032 draft

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planemo upload for repository https://github.com/brsynth/icfree-ml commit b669b043a7cd633a9ba1ac2cf2a7f3ed09c3e92e-dirty
author tduigou
date Tue, 10 Sep 2024 13:42:44 +0000
parents caee84791e0d
children 2571577e3b0c
comparison
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5:caee84791e0d 6:39f049e5b032
9 python -m icfree.instructor 9 python -m icfree.instructor
10 '$source_plate_file' 10 '$source_plate_file'
11 '$destination_plate_file' 11 '$destination_plate_file'
12 'instructor.csv' 12 'instructor.csv'
13 --source_plate_type '$adv.source_plate_type' 13 --source_plate_type '$adv.source_plate_type'
14 --max_transfer_volume '$max_transfer_volume' 14 --max_transfer_volume '$adv.max_transfer_volume'
15 #if str($adv.split_threshold) != '' 15 #if str($adv.split_threshold) != ''
16 --split_threshold '$split_threshold' 16 --split_threshold '$adv.split_threshold'
17 #end if 17 #end if
18 #if str($adv.split_components) != '' 18 #if str($adv.split_components) != ''
19 --split_components '$split_components' 19 --split_components '$adv.split_components'
20 #end if 20 #end if
21 ]]></command> 21 ]]></command>
22 <inputs> 22 <inputs>
23 <param name="source_plate_file" type="data" format="csv" label="Source corresponding to plate/wells" help="Output from iCFree plates designer"/> 23 <param name="source_plate_file" type="data" format="csv" label="Source corresponding to plate/wells" help="Output from iCFree plates designer"/>
24 <param name="destination_plate_file" type="data" format="csv" label="Destination corresponding to plate/wells" help="Output from iCFree plates designer"/> 24 <param name="destination_plate_file" type="data" format="csv" label="Destination corresponding to plate/wells" help="Output from iCFree plates designer"/>
25 <section name="adv" title="Advanced Options" expanded="false"> 25 <section name="adv" title="Advanced Options" expanded="false">
26 <param name="source_plate_type" type="text" value="default:384PP_AQ_GP3" label="Source plate type" help="Comma-separated list of component and plate type pairs, e.g., 'Component_1:384PP_AQ_CP,Component_2:384PP_AQ_GP3'. Default for all is default:384PP_AQ_GP3." > 26 <param name="source_plate_type" type="text" value="default:384PP_AQ_GP3" label="Source plate type" help="Comma-separated list of component and plate type pairs, e.g., 'Component_1:384PP_AQ_CP,Component_2:384PP_AQ_GP3'. Default for all is default:384PP_AQ_GP3." >
27 <validator type="empty_field" message="Source plate type is required"/> 27 <validator type="empty_field" message="Source plate type is required"/>
28 </param> 28 </param>
29 <param argument="max_transfer_volume" type="integer" min="1" max="50000" value="500" label="Maximum transfer volume" help="Maximum volume for a single transfer. If not specified, no splitting will be performed." /> 29 <param argument="max_transfer_volume" type="float" min="2.5" max="500000" value="100000" label="Maximum transfer volume" help="Maximum volume for a single transfer. If not specified, no splitting will be performed." />
30 <param argument="split_threshold" type="integer" min="1" max="50000" value="500" label="Split threshold" help="Volume threshold above which transfers need to be split. If not specified, no splitting will be performed." /> 30 <param argument="split_threshold" type="float" min="2.5" max="500000" value="100000" label="Split threshold" help="Volume threshold above which transfers need to be split. If not specified, no splitting will be performed." />
31 <param name="split_components" type="text" optional="true" label="Split components" help="Comma-separated list of component names to create separate files for." > 31 <param name="split_components" type="text" optional="true" label="Split components" help="Comma-separated list of component names to create separate files for." >
32 </param> 32 </param>
33 </section> 33 </section>
34 </inputs> 34 </inputs>
35 <outputs> 35 <outputs>