Mercurial > repos > tduigou > icfree_learner
diff learner.xml @ 9:9852c2c641b2 draft default tip
planemo upload for repository https://github.com/brsynth/icfree-ml commit 16315dee62caf50b1820964b0536c1cf61c67ceb
| author | tduigou |
|---|---|
| date | Fri, 07 Feb 2025 11:08:31 +0000 |
| parents | fad19e8ec225 |
| children |
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--- a/learner.xml Thu Feb 06 22:07:23 2025 +0000 +++ b/learner.xml Fri Feb 07 11:08:31 2025 +0000 @@ -42,8 +42,8 @@ <environment_variable name="MPLCONFIGDIR">.matplotlib</environment_variable> </environment_variables> <inputs> - <param name="input_data_csv" type="data" format="csv" multiple="true" label="Input data files" help="Input data files" /> - <param name="input_param_tsv" type="data" format="tabular" label="Parameter values for the experiments" help="Parameter values for the experiment"/> + <param name="input_param_tsv" type="data" format="tabular" label="Sampling file (X)"/> + <param name="input_data_csv" type="data" format="csv" multiple="true" label="Fluo/Lumi values (Y)" /> <section name="adv" title="Advanced Options" expanded="false"> <param name="name_list" type="text" value="" label="Labels of the feature list" help="A comma-separated string of column names or identifiers, converted to a list of strings representing columns that contain labels (y). This separates y columns from the rest (X features). (Default: Yield1,Yield2,Yield3,Yield4,Yield5)" /> <param name="test" type="boolean" label="Validate the model" help="A flag for validating the model; not required to run inside the active learning loop. If not set, skip the validating step" checked="false" /> @@ -72,7 +72,7 @@ </section> </inputs> <outputs> - <data name="output_csv" format="csv" label="${tool.name} - Data"> + <data name="output_csv" format="csv" label="${tool.name} - Samples to test"> <discover_datasets pattern="(?P<designation>.*).csv" ext="csv" directory="outdir" assign_primary_output="true" /> <!-- <discover_datasets pattern="__designation_and_ext__" ext="csv" directory="outdir" assign_primary_output="true"/> --> </data> @@ -85,7 +85,7 @@ <!-- python -m icfree.learner -data_folder learner -parameter_file learner.input.param.tsv -output_folder tmp -save_plot -verbose -seed 85 --> <param name="input_data_csv" value="learner.input.data.1.csv,learner.input.data.2.csv" /> <param name="input_param_tsv" value="learner.input.param.tsv" /> - <output name="output_csv"> + <output name="output_csv" count="1"> <assert_contents> <has_n_lines n="51" /> </assert_contents> @@ -127,7 +127,7 @@ <param name="km" value="5" /> <param name="ks" value="2" /> <!-- <element name="next_sampling_ei5" file="learner.output.data.2.csv" ftype="csv" > --> - <output name="output_csv"> + <output name="output_csv" count="1"> <assert_contents> <has_n_lines n="6" /> </assert_contents>
