Mercurial > repos > tduigou > icfree_learner

diff learner.xml @ 8:fad19e8ec225 draft

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planemo upload for repository https://github.com/brsynth/icfree-ml commit ae536fb3fb6d680caad90239b8e28b378c731fa6
author tduigou
date Thu, 06 Feb 2025 22:07:23 +0000
parents cac9eb21fb69
children 9852c2c641b2
line wrap: on
line diff
--- a/learner.xml	Thu Feb 06 15:11:19 2025 +0000
+++ b/learner.xml	Thu Feb 06 22:07:23 2025 +0000
@@ -36,7 +36,7 @@
             --km '$adv.km'
             --ks '$adv.ks'
             --save_plot
-            --verbose && ls 'outdir'
+            --verbose
     ]]></command>
     <environment_variables>
         <environment_variable name="MPLCONFIGDIR">.matplotlib</environment_variable>
@@ -73,10 +73,11 @@
     </inputs>
     <outputs>
         <data name="output_csv" format="csv" label="${tool.name} - Data">
-            <discover_datasets pattern="(?P&lt;designation&gt;.*)\.csv" ext="csv" directory="outdir" />
+            <discover_datasets pattern="(?P&lt;designation&gt;.*).csv" ext="csv" directory="outdir" assign_primary_output="true" />
+            <!-- <discover_datasets pattern="__designation_and_ext__" ext="csv" directory="outdir" assign_primary_output="true"/> -->
         </data>
         <collection name="output_png" type="list" label="${tool.name} - Plot">
-            <discover_datasets pattern="(?P&lt;name&gt;.*)\.png" format="png" directory="outdir" />
+            <discover_datasets pattern="(?P&lt;name&gt;.*).png" format="png" directory="outdir" />
         </collection>
     </outputs>
     <tests>
@@ -85,11 +86,9 @@
             <param name="input_data_csv" value="learner.input.data.1.csv,learner.input.data.2.csv" />
             <param name="input_param_tsv" value="learner.input.param.tsv" />
             <output name="output_csv">
-                <discovered_dataset designation="next_sampling_ei50" ftype="csv">
-                    <assert_contents>
-                        <has_n_lines n="51" />
-                    </assert_contents>
-                </discovered_dataset>
+                <assert_contents>
+                    <has_n_lines n="51" />
+                </assert_contents>
             </output>
             <output_collection name="output_png" type="list" count="4">
                 <element name="EI selected">
@@ -129,11 +128,9 @@
             <param name="ks" value="2" />
             <!-- <element name="next_sampling_ei5" file="learner.output.data.2.csv" ftype="csv" > -->
             <output name="output_csv">
-                <discovered_dataset designation="next_sampling_ei5" ftype="csv">
-                    <assert_contents>
-                        <has_n_lines n="6" />
-                    </assert_contents>
-                </discovered_dataset>
+                <assert_contents>
+                    <has_n_lines n="6" />
+                </assert_contents>
             </output>
             <output_collection name="output_png" type="list" count="4">
                 <element name="EI selected">