Mercurial > repos > tduigou > parameters_maystro_workflow_2

annotate test-data/test_json_workflow2.json @ 0:f80ed73f9f9a draft default tip

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planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools/parameters_maystro commit db4ac861e1d03fcdfe94321d858839124e493930-dirty
author tduigou
date Wed, 23 Jul 2025 09:40:00 +0000
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f80ed73f9f9a planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools/parameters_maystro commit db4ac861e1d03fcdfe94321d858839124e493930-dirty
tduigou
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1 {
f80ed73f9f9a planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools/parameters_maystro commit db4ac861e1d03fcdfe94321d858839124e493930-dirty
tduigou
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2 "DnaOptimizationProblemClass":"DnaOptimizationProblem",
f80ed73f9f9a planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools/parameters_maystro commit db4ac861e1d03fcdfe94321d858839124e493930-dirty
tduigou
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3 "avoid_patterns": "BsaI_site\nNotI_site\nXbaI_site\nClaI_site\n8x1mer",
f80ed73f9f9a planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools/parameters_maystro commit db4ac861e1d03fcdfe94321d858839124e493930-dirty
tduigou
parents:
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4 "hairpin_constraints": "stem_size=20, hairpin_window=200\nstem_size=10, hairpin_window=100",
f80ed73f9f9a planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools/parameters_maystro commit db4ac861e1d03fcdfe94321d858839124e493930-dirty
tduigou
parents:
diff changeset
5 "gc_constraints": "mini=0.1, maxi=0.9\nmini=0.3, maxi=0.7, window=50",
f80ed73f9f9a planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools/parameters_maystro commit db4ac861e1d03fcdfe94321d858839124e493930-dirty
tduigou
parents:
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6 "kmer_size": "15",
f80ed73f9f9a planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools/parameters_maystro commit db4ac861e1d03fcdfe94321d858839124e493930-dirty
tduigou
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7 "assembly_plan_name": "Type2sRestrictionAssembly",
f80ed73f9f9a planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools/parameters_maystro commit db4ac861e1d03fcdfe94321d858839124e493930-dirty
tduigou
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8 "topology": "circular",
f80ed73f9f9a planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools/parameters_maystro commit db4ac861e1d03fcdfe94321d858839124e493930-dirty
tduigou
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9 "enzyme": "auto",
f80ed73f9f9a planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools/parameters_maystro commit db4ac861e1d03fcdfe94321d858839124e493930-dirty
tduigou
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10 "execution": "true",
f80ed73f9f9a planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools/parameters_maystro commit db4ac861e1d03fcdfe94321d858839124e493930-dirty
tduigou
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11 "db_uri": "postgresql://postgres:RK17@localhost:5432/test_fragments_db",
f80ed73f9f9a planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools/parameters_maystro commit db4ac861e1d03fcdfe94321d858839124e493930-dirty
tduigou
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12 "table": "sample",
f80ed73f9f9a planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools/parameters_maystro commit db4ac861e1d03fcdfe94321d858839124e493930-dirty
tduigou
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13 "fragment_column": "fragment",
f80ed73f9f9a planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools/parameters_maystro commit db4ac861e1d03fcdfe94321d858839124e493930-dirty
tduigou
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14 "sequence_column": "sequence",
f80ed73f9f9a planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools/parameters_maystro commit db4ac861e1d03fcdfe94321d858839124e493930-dirty
tduigou
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15 "annotation_column": "annotation"
f80ed73f9f9a planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools/parameters_maystro commit db4ac861e1d03fcdfe94321d858839124e493930-dirty
tduigou
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16 }