Mercurial > repos > tduigou > partsgenie
view test-data/enzymes_lycopene.xml @ 0:295a21fc55d0 draft
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
author | tduigou |
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date | Tue, 21 Dec 2021 11:21:30 +0000 |
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<?xml version="1.0" ?> <rdf:RDF xmlns:prov="http://www.w3.org/ns/prov#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:sys-bio="http://sys-bio.org#" xmlns:sbol="http://sbols.org/v2#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"> <sbol:ComponentDefinition rdf:about="http://liverpool.ac.uk/ComponentDefinition/P21687_30000_gene/1"> <sbol:displayId>P21687_30000_gene</sbol:displayId> <sbol:persistentIdentity rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21687_30000_gene"/> <sbol:role rdf:resource="http://identifiers.org/so/SO:0000704"/> <sbol:type rdf:resource="http://www.biopax.org/release/biopax-level3.owl#DnaRegion"/> <sbol:type rdf:resource="http://identifiers.org/so/SO:0000987"/> <sbol:version>1</sbol:version> <sbol:component> <sbol:Component rdf:about="http://liverpool.ac.uk/ComponentDefinition/P21687_30000_gene/rxn_3_5_prime_assembly_0/1"> <sbol:access rdf:resource="http://sbols.org/v2#public"/> <sbol:definition 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</sbol:component> <sbol:component> <sbol:Component rdf:about="http://liverpool.ac.uk/ComponentDefinition/P21687_20000_gene/P21687_20000_rbs_0/1"> <sbol:access rdf:resource="http://sbols.org/v2#public"/> <sbol:definition rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21687_20000_rbs/1"/> <sbol:displayId>P21687_20000_rbs_0</sbol:displayId> <sbol:persistentIdentity rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21687_20000_gene/P21687_20000_rbs_0"/> <sbol:roleIntegration rdf:resource="http://sbols.org/v2#mergeRoles"/> <sbol:version>1</sbol:version> </sbol:Component> </sbol:component> <sbol:component> <sbol:Component rdf:about="http://liverpool.ac.uk/ComponentDefinition/P21687_20000_gene/P21687_20000_cds_0/1"> <sbol:access rdf:resource="http://sbols.org/v2#public"/> <sbol:definition rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21687_20000_cds/1"/> <sbol:displayId>P21687_20000_cds_0</sbol:displayId> <sbol:persistentIdentity rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21687_20000_gene/P21687_20000_cds_0"/> <sbol:roleIntegration rdf:resource="http://sbols.org/v2#mergeRoles"/> <sbol:version>1</sbol:version> </sbol:Component> </sbol:component> <sbol:component> <sbol:Component rdf:about="http://liverpool.ac.uk/ComponentDefinition/P21687_20000_gene/rxn_3_3_prime_assembly_0/1"> <sbol:access rdf:resource="http://sbols.org/v2#public"/> <sbol:definition rdf:resource="http://liverpool.ac.uk/ComponentDefinition/rxn_3_3_prime_assembly/1"/> <sbol:displayId>rxn_3_3_prime_assembly_0</sbol:displayId> <sbol:persistentIdentity rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21687_20000_gene/rxn_3_3_prime_assembly_0"/> <sbol:roleIntegration rdf:resource="http://sbols.org/v2#mergeRoles"/> <sbol:version>1</sbol:version> </sbol:Component> </sbol:component> <sbol:sequenceConstraint> <sbol:SequenceConstraint rdf:about="http://liverpool.ac.uk/ComponentDefinition/P21687_20000_gene/constraint_0/1"> <sbol:displayId>constraint_0</sbol:displayId> <sbol:object rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21687_20000_gene/P21687_20000_rbs_0/1"/> <sbol:persistentIdentity rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21687_20000_gene/constraint_0"/> <sbol:restriction rdf:resource="http://sbols.org/v2#precedes"/> <sbol:subject rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21687_20000_gene/rxn_3_5_prime_assembly_0/1"/> <sbol:version>1</sbol:version> </sbol:SequenceConstraint> </sbol:sequenceConstraint> <sbol:sequenceConstraint> <sbol:SequenceConstraint rdf:about="http://liverpool.ac.uk/ComponentDefinition/P21687_20000_gene/constraint_1/1"> <sbol:displayId>constraint_1</sbol:displayId> <sbol:object rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21687_20000_gene/P21687_20000_cds_0/1"/> <sbol:persistentIdentity rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21687_20000_gene/constraint_1"/> <sbol:restriction rdf:resource="http://sbols.org/v2#precedes"/> <sbol:subject rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21687_20000_gene/P21687_20000_rbs_0/1"/> <sbol:version>1</sbol:version> </sbol:SequenceConstraint> </sbol:sequenceConstraint> <sbol:sequenceConstraint> <sbol:SequenceConstraint rdf:about="http://liverpool.ac.uk/ComponentDefinition/P21687_20000_gene/constraint_2/1"> <sbol:displayId>constraint_2</sbol:displayId> <sbol:object rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21687_20000_gene/rxn_3_3_prime_assembly_0/1"/> <sbol:persistentIdentity rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21687_20000_gene/constraint_2"/> <sbol:restriction rdf:resource="http://sbols.org/v2#precedes"/> <sbol:subject rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21687_20000_gene/P21687_20000_cds_0/1"/> <sbol:version>1</sbol:version> </sbol:SequenceConstraint> </sbol:sequenceConstraint> </sbol:ComponentDefinition> <sbol:ComponentDefinition 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rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21684_10000_gene/rxn_1_5_prime_assembly_0"/> <sbol:roleIntegration rdf:resource="http://sbols.org/v2#mergeRoles"/> <sbol:version>1</sbol:version> </sbol:Component> </sbol:component> <sbol:component> <sbol:Component rdf:about="http://liverpool.ac.uk/ComponentDefinition/P21684_10000_gene/P21684_10000_rbs_0/1"> <sbol:access rdf:resource="http://sbols.org/v2#public"/> <sbol:definition rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21684_10000_rbs/1"/> <sbol:displayId>P21684_10000_rbs_0</sbol:displayId> <sbol:persistentIdentity rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21684_10000_gene/P21684_10000_rbs_0"/> <sbol:roleIntegration rdf:resource="http://sbols.org/v2#mergeRoles"/> <sbol:version>1</sbol:version> </sbol:Component> </sbol:component> <sbol:component> <sbol:Component rdf:about="http://liverpool.ac.uk/ComponentDefinition/P21684_10000_gene/P21684_10000_cds_0/1"> <sbol:access rdf:resource="http://sbols.org/v2#public"/> <sbol:definition rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21684_10000_cds/1"/> <sbol:displayId>P21684_10000_cds_0</sbol:displayId> <sbol:persistentIdentity rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21684_10000_gene/P21684_10000_cds_0"/> <sbol:roleIntegration rdf:resource="http://sbols.org/v2#mergeRoles"/> <sbol:version>1</sbol:version> </sbol:Component> </sbol:component> <sbol:component> <sbol:Component rdf:about="http://liverpool.ac.uk/ComponentDefinition/P21684_10000_gene/rxn_1_3_prime_assembly_0/1"> <sbol:access rdf:resource="http://sbols.org/v2#public"/> <sbol:definition rdf:resource="http://liverpool.ac.uk/ComponentDefinition/rxn_1_3_prime_assembly/1"/> <sbol:displayId>rxn_1_3_prime_assembly_0</sbol:displayId> <sbol:persistentIdentity rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21684_10000_gene/rxn_1_3_prime_assembly_0"/> <sbol:roleIntegration rdf:resource="http://sbols.org/v2#mergeRoles"/> <sbol:version>1</sbol:version> </sbol:Component> </sbol:component> <sbol:component> <sbol:Component rdf:about="http://liverpool.ac.uk/ComponentDefinition/P21684_10000_gene/rxn_2_5_prime_assembly_0/1"> <sbol:access rdf:resource="http://sbols.org/v2#public"/> <sbol:definition rdf:resource="http://liverpool.ac.uk/ComponentDefinition/rxn_2_5_prime_assembly/1"/> <sbol:displayId>rxn_2_5_prime_assembly_0</sbol:displayId> <sbol:persistentIdentity rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21684_10000_gene/rxn_2_5_prime_assembly_0"/> <sbol:roleIntegration rdf:resource="http://sbols.org/v2#mergeRoles"/> <sbol:version>1</sbol:version> </sbol:Component> </sbol:component> <sbol:component> <sbol:Component rdf:about="http://liverpool.ac.uk/ComponentDefinition/P21684_10000_gene/P21684_10000_rbs_1/1"> <sbol:access rdf:resource="http://sbols.org/v2#public"/> <sbol:definition rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21684_10000_rbs/1"/> <sbol:displayId>P21684_10000_rbs_1</sbol:displayId> <sbol:persistentIdentity rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21684_10000_gene/P21684_10000_rbs_1"/> <sbol:roleIntegration rdf:resource="http://sbols.org/v2#mergeRoles"/> <sbol:version>1</sbol:version> </sbol:Component> </sbol:component> <sbol:component> <sbol:Component rdf:about="http://liverpool.ac.uk/ComponentDefinition/P21684_10000_gene/P21684_10000_cds_1/1"> <sbol:access rdf:resource="http://sbols.org/v2#public"/> <sbol:definition rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21684_10000_cds/1"/> <sbol:displayId>P21684_10000_cds_1</sbol:displayId> <sbol:persistentIdentity rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21684_10000_gene/P21684_10000_cds_1"/> <sbol:roleIntegration rdf:resource="http://sbols.org/v2#mergeRoles"/> <sbol:version>1</sbol:version> </sbol:Component> </sbol:component> <sbol:component> <sbol:Component rdf:about="http://liverpool.ac.uk/ComponentDefinition/P21684_10000_gene/rxn_2_3_prime_assembly_0/1"> <sbol:access rdf:resource="http://sbols.org/v2#public"/> <sbol:definition rdf:resource="http://liverpool.ac.uk/ComponentDefinition/rxn_2_3_prime_assembly/1"/> <sbol:displayId>rxn_2_3_prime_assembly_0</sbol:displayId> <sbol:persistentIdentity rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21684_10000_gene/rxn_2_3_prime_assembly_0"/> <sbol:roleIntegration rdf:resource="http://sbols.org/v2#mergeRoles"/> <sbol:version>1</sbol:version> </sbol:Component> </sbol:component> <sbol:sequenceConstraint> <sbol:SequenceConstraint rdf:about="http://liverpool.ac.uk/ComponentDefinition/P21684_10000_gene/constraint_0/1"> <sbol:displayId>constraint_0</sbol:displayId> <sbol:object rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21684_10000_gene/P21684_10000_rbs_1/1"/> <sbol:persistentIdentity rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21684_10000_gene/constraint_0"/> <sbol:restriction rdf:resource="http://sbols.org/v2#precedes"/> <sbol:subject rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21684_10000_gene/rxn_2_5_prime_assembly_0/1"/> <sbol:version>1</sbol:version> </sbol:SequenceConstraint> </sbol:sequenceConstraint> <sbol:sequenceConstraint> <sbol:SequenceConstraint rdf:about="http://liverpool.ac.uk/ComponentDefinition/P21684_10000_gene/constraint_1/1"> <sbol:displayId>constraint_1</sbol:displayId> <sbol:object rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21684_10000_gene/P21684_10000_cds_1/1"/> <sbol:persistentIdentity rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21684_10000_gene/constraint_1"/> <sbol:restriction rdf:resource="http://sbols.org/v2#precedes"/> <sbol:subject rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21684_10000_gene/P21684_10000_rbs_1/1"/> <sbol:version>1</sbol:version> </sbol:SequenceConstraint> </sbol:sequenceConstraint> <sbol:sequenceConstraint> <sbol:SequenceConstraint rdf:about="http://liverpool.ac.uk/ComponentDefinition/P21684_10000_gene/constraint_2/1"> <sbol:displayId>constraint_2</sbol:displayId> <sbol:object rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21684_10000_gene/rxn_2_3_prime_assembly_0/1"/> <sbol:persistentIdentity rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21684_10000_gene/constraint_2"/> <sbol:restriction rdf:resource="http://sbols.org/v2#precedes"/> <sbol:subject rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21684_10000_gene/P21684_10000_cds_1/1"/> <sbol:version>1</sbol:version> </sbol:SequenceConstraint> </sbol:sequenceConstraint> </sbol:ComponentDefinition> <sbol:ComponentDefinition rdf:about="http://liverpool.ac.uk/ComponentDefinition/P21685_20000_gene/1"> <sbol:displayId>P21685_20000_gene</sbol:displayId> <sbol:persistentIdentity rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21685_20000_gene"/> <sbol:role rdf:resource="http://identifiers.org/so/SO:0000704"/> <sbol:type 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rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21685_20000_rbs/1"/> <sbol:displayId>P21685_20000_rbs_0</sbol:displayId> <sbol:persistentIdentity rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21685_20000_gene/P21685_20000_rbs_0"/> <sbol:roleIntegration rdf:resource="http://sbols.org/v2#mergeRoles"/> <sbol:version>1</sbol:version> </sbol:Component> </sbol:component> <sbol:component> <sbol:Component rdf:about="http://liverpool.ac.uk/ComponentDefinition/P21685_20000_gene/P21685_20000_cds_0/1"> <sbol:access rdf:resource="http://sbols.org/v2#public"/> <sbol:definition rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21685_20000_cds/1"/> <sbol:displayId>P21685_20000_cds_0</sbol:displayId> <sbol:persistentIdentity rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21685_20000_gene/P21685_20000_cds_0"/> <sbol:roleIntegration rdf:resource="http://sbols.org/v2#mergeRoles"/> <sbol:version>1</sbol:version> </sbol:Component> </sbol:component> <sbol:component> <sbol:Component rdf:about="http://liverpool.ac.uk/ComponentDefinition/P21685_20000_gene/rxn_3_3_prime_assembly_0/1"> <sbol:access rdf:resource="http://sbols.org/v2#public"/> <sbol:definition rdf:resource="http://liverpool.ac.uk/ComponentDefinition/rxn_3_3_prime_assembly/1"/> <sbol:displayId>rxn_3_3_prime_assembly_0</sbol:displayId> <sbol:persistentIdentity rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21685_20000_gene/rxn_3_3_prime_assembly_0"/> <sbol:roleIntegration rdf:resource="http://sbols.org/v2#mergeRoles"/> <sbol:version>1</sbol:version> </sbol:Component> </sbol:component> <sbol:sequenceConstraint> <sbol:SequenceConstraint rdf:about="http://liverpool.ac.uk/ComponentDefinition/P21685_20000_gene/constraint_0/1"> <sbol:displayId>constraint_0</sbol:displayId> <sbol:object rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21685_20000_gene/P21685_20000_rbs_0/1"/> <sbol:persistentIdentity 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