Mercurial > repos > tduigou > pathway_analysis_workflow
annotate Pathway_Analysis_workflow.ga @ 0:8fb4e270be9f draft default tip
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
author | tduigou |
---|---|
date | Mon, 13 Dec 2021 19:02:39 +0000 |
parents | |
children |
rev | line source |
---|---|
0
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
1 { |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
2 "a_galaxy_workflow": "true", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
3 "annotation": "", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
4 "format-version": "0.1", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
5 "name": "Pathway_Analysis_workflow", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
6 "steps": { |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
7 "0": { |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
8 "annotation": "", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
9 "content_id": null, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
10 "errors": null, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
11 "id": 0, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
12 "input_connections": {}, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
13 "inputs": [ |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
14 { |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
15 "description": "", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
16 "name": "rpbsml_pathways" |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
17 } |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
18 ], |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
19 "label": "rpbsml_pathways", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
20 "name": "Input dataset collection", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
21 "outputs": [], |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
22 "position": { |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
23 "bottom": 522.8000030517578, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
24 "height": 61.80000305175781, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
25 "left": -138, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
26 "right": 62, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
27 "top": 461, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
28 "width": 200, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
29 "x": -138, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
30 "y": 461 |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
31 }, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
32 "tool_id": null, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
33 "tool_state": "{\"optional\": false, \"collection_type\": \"list\"}", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
34 "tool_version": null, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
35 "type": "data_collection_input", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
36 "uuid": "40022f70-14b3-4291-aa3b-8f2693d6752c", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
37 "workflow_outputs": [ |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
38 { |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
39 "label": null, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
40 "output_name": "output", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
41 "uuid": "760719ed-d2e1-47d5-9f46-d6dd876f6b6c" |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
42 } |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
43 ] |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
44 }, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
45 "1": { |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
46 "annotation": "", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
47 "content_id": null, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
48 "errors": null, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
49 "id": 1, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
50 "input_connections": {}, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
51 "inputs": [ |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
52 { |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
53 "description": "", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
54 "name": "sbml_model" |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
55 } |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
56 ], |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
57 "label": "sbml_model", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
58 "name": "Input dataset", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
59 "outputs": [], |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
60 "position": { |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
61 "bottom": 632.8000030517578, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
62 "height": 61.80000305175781, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
63 "left": -137, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
64 "right": 63, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
65 "top": 571, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
66 "width": 200, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
67 "x": -137, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
68 "y": 571 |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
69 }, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
70 "tool_id": null, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
71 "tool_state": "{\"optional\": false}", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
72 "tool_version": null, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
73 "type": "data_input", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
74 "uuid": "715f8537-ff4b-4b00-86a2-0c358576ddd8", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
75 "workflow_outputs": [ |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
76 { |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
77 "label": null, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
78 "output_name": "output", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
79 "uuid": "80fd34b8-0b64-4bd7-8860-4354ecc86f78" |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
80 } |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
81 ] |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
82 }, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
83 "2": { |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
84 "annotation": "", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
85 "content_id": "toolshed.g2.bx.psu.edu/repos/tduigou/rpfba/rpFBA/5.9.2", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
86 "errors": null, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
87 "id": 2, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
88 "input_connections": { |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
89 "model": { |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
90 "id": 1, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
91 "output_name": "output" |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
92 }, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
93 "pathway": { |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
94 "id": 0, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
95 "output_name": "output" |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
96 } |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
97 }, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
98 "inputs": [], |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
99 "label": null, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
100 "name": "FBA", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
101 "outputs": [ |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
102 { |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
103 "name": "pathway_with_fba", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
104 "type": "xml" |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
105 } |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
106 ], |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
107 "position": { |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
108 "bottom": 612.6000061035156, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
109 "height": 123.60000610351562, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
110 "left": 157, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
111 "right": 357, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
112 "top": 489, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
113 "width": 200, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
114 "x": 157, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
115 "y": 489 |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
116 }, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
117 "post_job_actions": {}, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
118 "tool_id": "toolshed.g2.bx.psu.edu/repos/tduigou/rpfba/rpFBA/5.9.2", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
119 "tool_shed_repository": { |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
120 "changeset_revision": "fb5efc456dcc", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
121 "name": "rpfba", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
122 "owner": "tduigou", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
123 "tool_shed": "toolshed.g2.bx.psu.edu" |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
124 }, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
125 "tool_state": "{\"adv\": {\"merge\": \"false\", \"ignore_orphan_species\": \"true\", \"log_level\": \"error\"}, \"compartment_id\": \"MNXC3\", \"input_sim_type\": {\"sim_type\": \"fraction\", \"__current_case__\": 0, \"fraction_of\": \"0.75\", \"objective_rxn_id\": \"rxn_target\", \"biomass_rxn_id\": \"biomass\"}, \"model\": {\"__class__\": \"ConnectedValue\"}, \"pathway\": {\"__class__\": \"ConnectedValue\"}, \"__page__\": null, \"__rerun_remap_job_id__\": null}", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
126 "tool_version": "5.9.2", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
127 "type": "tool", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
128 "uuid": "219ff424-7956-43bc-adaf-ebbb4341af01", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
129 "workflow_outputs": [ |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
130 { |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
131 "label": null, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
132 "output_name": "pathway_with_fba", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
133 "uuid": "91b6f335-54fa-42bd-a6bb-2ff71f2fd50b" |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
134 } |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
135 ] |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
136 }, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
137 "3": { |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
138 "annotation": "", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
139 "content_id": "toolshed.g2.bx.psu.edu/repos/tduigou/rpthermo/rpThermo/5.9.2", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
140 "errors": null, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
141 "id": 3, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
142 "input_connections": { |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
143 "input": { |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
144 "id": 2, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
145 "output_name": "pathway_with_fba" |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
146 } |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
147 }, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
148 "inputs": [], |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
149 "label": null, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
150 "name": "Thermodynamics", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
151 "outputs": [ |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
152 { |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
153 "name": "pathway_with_thermo", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
154 "type": "xml" |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
155 } |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
156 ], |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
157 "position": { |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
158 "bottom": 604.6000061035156, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
159 "height": 113.60000610351562, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
160 "left": 439, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
161 "right": 639, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
162 "top": 491, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
163 "width": 200, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
164 "x": 439, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
165 "y": 491 |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
166 }, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
167 "post_job_actions": {}, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
168 "tool_id": "toolshed.g2.bx.psu.edu/repos/tduigou/rpthermo/rpThermo/5.9.2", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
169 "tool_shed_repository": { |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
170 "changeset_revision": "44e54b56328d", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
171 "name": "rpthermo", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
172 "owner": "tduigou", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
173 "tool_shed": "toolshed.g2.bx.psu.edu" |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
174 }, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
175 "tool_state": "{\"adv\": {\"ph\": \"7.5\", \"ionic_strength\": \"200.0\", \"pMg\": \"10.0\", \"temp_k\": \"298.15\"}, \"input\": {\"__class__\": \"ConnectedValue\"}, \"__page__\": null, \"__rerun_remap_job_id__\": null}", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
176 "tool_version": "5.9.2", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
177 "type": "tool", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
178 "uuid": "24b0f086-293c-45cf-be0e-b17265316a38", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
179 "workflow_outputs": [ |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
180 { |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
181 "label": null, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
182 "output_name": "pathway_with_thermo", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
183 "uuid": "f0c3c790-65ac-42d9-8793-9ec26327ad74" |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
184 } |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
185 ] |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
186 }, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
187 "4": { |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
188 "annotation": "", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
189 "content_id": "toolshed.g2.bx.psu.edu/repos/tduigou/rpscore/rpscore/5.9.2", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
190 "errors": null, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
191 "id": 4, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
192 "input_connections": { |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
193 "pathway": { |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
194 "id": 3, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
195 "output_name": "pathway_with_thermo" |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
196 } |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
197 }, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
198 "inputs": [], |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
199 "label": null, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
200 "name": "Score Pathway", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
201 "outputs": [ |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
202 { |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
203 "name": "scored_pathway", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
204 "type": "xml" |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
205 } |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
206 ], |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
207 "position": { |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
208 "bottom": 604.1999969482422, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
209 "height": 93.19999694824219, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
210 "left": 692, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
211 "right": 892, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
212 "top": 511, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
213 "width": 200, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
214 "x": 692, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
215 "y": 511 |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
216 }, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
217 "post_job_actions": {}, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
218 "tool_id": "toolshed.g2.bx.psu.edu/repos/tduigou/rpscore/rpscore/5.9.2", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
219 "tool_shed_repository": { |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
220 "changeset_revision": "f818d489ca7d", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
221 "name": "rpscore", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
222 "owner": "tduigou", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
223 "tool_shed": "toolshed.g2.bx.psu.edu" |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
224 }, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
225 "tool_state": "{\"adv\": {\"no_of_rxns_thres\": \"10\", \"log_level\": \"error\"}, \"pathway\": {\"__class__\": \"ConnectedValue\"}, \"__page__\": null, \"__rerun_remap_job_id__\": null}", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
226 "tool_version": "5.9.2", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
227 "type": "tool", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
228 "uuid": "418f937f-5114-4330-9825-42a2c0028b78", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
229 "workflow_outputs": [ |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
230 { |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
231 "label": null, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
232 "output_name": "scored_pathway", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
233 "uuid": "c99d61ef-cd94-48be-ae0e-fbac6c6b5d5b" |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
234 } |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
235 ] |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
236 }, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
237 "5": { |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
238 "annotation": "", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
239 "content_id": "toolshed.g2.bx.psu.edu/repos/tduigou/rpranker/rpranker/5.10.0", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
240 "errors": null, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
241 "id": 5, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
242 "input_connections": { |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
243 "pathway_collection": { |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
244 "id": 4, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
245 "output_name": "scored_pathway" |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
246 } |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
247 }, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
248 "inputs": [ |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
249 { |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
250 "description": "runtime parameter for tool Rank Pathways", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
251 "name": "pathway_collection" |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
252 } |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
253 ], |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
254 "label": null, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
255 "name": "Rank Pathways", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
256 "outputs": [ |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
257 { |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
258 "name": "sorted_pathways", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
259 "type": "csv" |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
260 } |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
261 ], |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
262 "position": { |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
263 "bottom": 635.1999969482422, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
264 "height": 93.19999694824219, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
265 "left": 933, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
266 "right": 1133, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
267 "top": 542, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
268 "width": 200, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
269 "x": 933, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
270 "y": 542 |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
271 }, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
272 "post_job_actions": {}, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
273 "tool_id": "toolshed.g2.bx.psu.edu/repos/tduigou/rpranker/rpranker/5.10.0", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
274 "tool_shed_repository": { |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
275 "changeset_revision": "e95370d2e5f9", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
276 "name": "rpranker", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
277 "owner": "tduigou", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
278 "tool_shed": "toolshed.g2.bx.psu.edu" |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
279 }, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
280 "tool_state": "{\"pathway_collection\": {\"__class__\": \"RuntimeValue\"}, \"__page__\": null, \"__rerun_remap_job_id__\": null}", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
281 "tool_version": "5.10.0", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
282 "type": "tool", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
283 "uuid": "2035ac50-9127-4363-90f5-86990ecc4239", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
284 "workflow_outputs": [ |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
285 { |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
286 "label": "Ranked Pathways", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
287 "output_name": "sorted_pathways", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
288 "uuid": "db1ad6c3-983a-4678-8db0-fe5c59b81025" |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
289 } |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
290 ] |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
291 } |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
292 }, |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
293 "tags": [], |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
294 "uuid": "f1092980-8652-4560-bda2-ed95629cad24", |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
295 "version": 3 |
8fb4e270be9f
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff
changeset
|
296 } |