Mercurial > repos > tduigou > rp2biosensor
diff rp2biosensor.xml @ 5:fdaf5a0af992 draft
planemo upload for repository https://github.com/brsynth/rp2biosensor commit 1e01b679611d980f87089184e7d8a538b96d68c7
author | tduigou |
---|---|
date | Tue, 30 May 2023 21:08:46 +0000 |
parents | b9aa7267df42 |
children | 71f3a2616dd0 |
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--- a/rp2biosensor.xml Mon May 01 01:20:09 2023 +0000 +++ b/rp2biosensor.xml Tue May 30 21:08:46 2023 +0000 @@ -1,8 +1,8 @@ -<tool id="rp2biosensor" name="rp2biosensor" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="21.09"> +<tool id="rp2biosensor" name="rp2biosensor" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="21.09" license="MIT"> <description>Build Sensing-Enabling Metabolic Pathways from RetroPath2.0 output</description> <macros> <token name="@VERSION_SUFFIX@">0</token> - <token name="@TOOL_VERSION@">3.1.0</token> + <token name="@TOOL_VERSION@">3.2.1</token> </macros> <requirements> <requirement type="package" version="@TOOL_VERSION@">rp2biosensor</requirement> @@ -15,6 +15,7 @@ #if str($adv.json_graph) == "true" --ojson '$json_file' #end if + --cache-dir "\${TMPDIR:-.}" ]]></command> <inputs> <param name="rp2_results" type="data" format="csv" label="RetroPath2 output" help="Retrosynthesis network generated by RetroPath2.0 in CSV format."/> @@ -43,7 +44,7 @@ </tests> <help><![CDATA[ rp2biosensor -================ +============ **rp2biosensor** is an open-source Python software that extracts from the retrosynthetic network generated by `RetroPath2.0 <https://www.sciencedirect.com/science/article/pii/S1096717617301337>`_ the subnetwork of interest, linking the biosensor to the compound to be detected, and produce an interactive web page showing the transducing reactions. @@ -65,22 +66,11 @@ Optional: * **JSON file**\ : Output the graph as JSON file. - -Project Links ------------------- - -* `GitHub <https://github.com/brsynth/rp2biosensor>`_ - -License -------- - -* `MIT <https://github.com/brsynth/rp2biosensor/blob/master/LICENSE.md>`_ - ]]></help> <creator> - <person givenName="Thomas" familyName="Duigou" email="thomas.duigou@inrae.fr" identifier="https://orcid.org/0000-0002-2649-2950" /> + <organization name="BioRetroSynth" url="https://github.com/brsynth"/> </creator> <citations> <citation type="doi">10.1021/acssynbio.2c00138</citation> </citations> -</tool> \ No newline at end of file +</tool>