Mercurial > repos > tduigou > rp2biosensor

changeset 2:b0efd4b2ffba draft

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"planemo upload commit f40274f6b9f6a15eb4022aab21286d4c96cd8475-dirty"
author tduigou
date Mon, 07 Mar 2022 13:45:23 +0000
parents b7713d32248b
children 4b2318e9b097
files rp2biosensor.xml
diffstat 1 files changed, 5 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/rp2biosensor.xml	Fri Feb 25 07:16:18 2022 +0000
+++ b/rp2biosensor.xml	Mon Mar 07 13:45:23 2022 +0000
@@ -1,7 +1,7 @@
 <tool id="rp2biosensor" name="rp2biosensor" version="@TOOL_VERSION@" profile="19.09">
     <description>Build Sensing-Enabling Metabolic Pathways from RetroPath2.0 output</description>
     <macros>
-        <token name="@TOOL_VERSION@">2.1.0</token>
+        <token name="@TOOL_VERSION@">3.0.0</token>
     </macros>
     <requirements>
         <requirement type="package" version="@TOOL_VERSION@">rp2biosensor</requirement>
@@ -9,6 +9,7 @@
     <command detect_errors="exit_code"><![CDATA[
         python -m rp2biosensor
         '$rp2_results'
+        '$sink_file'
         --opath '$html_file'
         #if str($adv.json_graph) == "true"
             --ojson '$json_file'
@@ -16,6 +17,7 @@
     ]]></command>
     <inputs>
         <param name="rp2_results" type="data" format="csv" label="RetroPath2 output"/>
+        <param name="sink_file" type="data" format="csv" label="Sink file used for RetroPath2.0"/>
         <section name="adv" title="Advanced Options" expanded="false">
             <param name="json_graph" type="boolean" label="Output Graph in JSON?" checked="false" />
         </section>
@@ -45,6 +47,7 @@
 Required:
 
 * **rp2_results**\ : (string) RetroPath2.0 results.
+* **sink_file**\ : (string) Sink file used for RetroPath2.0.
 
 Output
 ------
@@ -63,7 +66,7 @@
 Version
 ----------
 
-2.1.0
+3.0.0
 
 Authors
 -------