Mercurial > repos > tduigou > rpcompletion

annotate test-data/rp_003_0001.xml @ 5:37bed74bbd44 draft default tip

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planemo upload commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
author tduigou
date Fri, 18 Nov 2022 16:07:59 +0000
parents e8d56cb2be03
children
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1 <?xml version="1.0" encoding="UTF-8"?>
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2 <sbml xmlns="http://www.sbml.org/sbml/level3/version1/core" xmlns:groups="http://www.sbml.org/sbml/level3/version1/groups/version1" xmlns:fbc="http://www.sbml.org/sbml/level3/version1/fbc/version2" level="3" version="1" groups:required="false" fbc:required="false">
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3 <model metaid="d4bfc4fec7c42e9de20c2ade1a21933a8c1ca015d4ca77b2b5f95790e798931c" id="RP_model_003_0001" name="003_0001" substanceUnits="mole" timeUnits="second" extentUnits="mole" fbc:strict="true">
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4 <listOfCompartments>
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5 <compartment metaid="_2e7d2c03a9507ae265ecf5b5356885a53393a2029d241394997265a1a25aefc6" sboTerm="SBO:0000290" id="c" name="cytosol" size="1" constant="true">
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6 <annotation>
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7 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
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8 <rdf:Description rdf:about="#_2e7d2c03a9507ae265ecf5b5356885a53393a2029d241394997265a1a25aefc6">
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9 <bqbiol:is>
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10 <rdf:Bag>
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11 <rdf:li rdf:resource="http://identifiers.org/bigg.compartment/c"/>
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12 <rdf:li rdf:resource="http://identifiers.org/bigg.compartment/c_c"/>
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13 <rdf:li rdf:resource="http://identifiers.org/metanetx.compartment/MNXC3"/>
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14 <rdf:li rdf:resource="http://identifiers.org/seed/c"/>
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15 <rdf:li rdf:resource="http://identifiers.org/seed/c0"/>
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16 <rdf:li rdf:resource="http://identifiers.org/seed/cytosol"/>
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17 <rdf:li rdf:resource="http://identifiers.org/name/cytosol"/>
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18 </rdf:Bag>
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19 </bqbiol:is>
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20 </rdf:Description>
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21 </rdf:RDF>
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22 </annotation>
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23 </compartment>
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24 </listOfCompartments>
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25 <listOfSpecies>
1
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26 <species metaid="_6817bb5f7133f50744b232330f1f3009343f785b8f77602ce5f44cdd9458f002" id="TARGET_0000000001" name="TARGET_0000000001" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
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27 <annotation>
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28 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
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29 <rdf:Description rdf:about="#_6817bb5f7133f50744b232330f1f3009343f785b8f77602ce5f44cdd9458f002">
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30 <bqbiol:is>
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31 <rdf:Bag/>
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32 </bqbiol:is>
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33 </rdf:Description>
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34 <rdf:BRSynth rdf:about="#_6817bb5f7133f50744b232330f1f3009343f785b8f77602ce5f44cdd9458f002">
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35 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
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36 <brsynth:smiles value="[H]C(=C([H])C([H])=C(C([H])=C([H])C([H])=C(C([H])=C([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H])C([H])([H])[H])C([H])([H])[H])C([H])=C(C([H])=C([H])C([H])=C(C([H])=C([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H])C([H])([H])[H])C([H])([H])[H]"/>
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37 <brsynth:inchi value="InChI=1S/C40H56/c1-33(2)19-13-23-37(7)27-17-31-39(9)29-15-25-35(5)21-11-12-22-36(6)26-16-30-40(10)32-18-28-38(8)24-14-20-34(3)4/h11-12,15-22,25-32H,13-14,23-24H2,1-10H3"/>
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38 <brsynth:inchikey value="OAIJSZIZWZSQBC-UHFFFAOYSA-N"/>
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39 </brsynth:brsynth>
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40 </rdf:BRSynth>
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41 </rdf:RDF>
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42 </annotation>
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43 </species>
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44 <species metaid="_47d72a86d31940edf1cc42c7a7361a7a96211dc2a6679326b8ad27a7e216ada0" id="MNXM83" name="isopentenyl diphosphate" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
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45 <annotation>
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46 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
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47 <rdf:Description rdf:about="#_47d72a86d31940edf1cc42c7a7361a7a96211dc2a6679326b8ad27a7e216ada0">
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48 <bqbiol:is>
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49 <rdf:Bag/>
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50 </bqbiol:is>
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51 </rdf:Description>
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52 <rdf:BRSynth rdf:about="#_47d72a86d31940edf1cc42c7a7361a7a96211dc2a6679326b8ad27a7e216ada0">
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53 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
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54 <brsynth:smiles value="[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])([H])C(=C([H])[H])C([H])([H])[H]"/>
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55 <brsynth:inchi value="InChI=1S/C5H12O7P2/c1-5(2)3-4-11-14(9,10)12-13(6,7)8/h1,3-4H2,2H3,(H,9,10)(H2,6,7,8)"/>
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56 <brsynth:inchikey value="NUHSROFQTUXZQQ-UHFFFAOYSA-N"/>
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57 </brsynth:brsynth>
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58 </rdf:BRSynth>
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59 </rdf:RDF>
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60 </annotation>
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61 </species>
1
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62 <species metaid="_2c27bb432be6149f648dcec0e702fd9bdf6449fb9f730bd86eeb0b63b93d8858" id="CMPD_0000000003" name="CMPD_0000000003" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
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63 <annotation>
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64 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
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65 <rdf:Description rdf:about="#_2c27bb432be6149f648dcec0e702fd9bdf6449fb9f730bd86eeb0b63b93d8858">
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66 <bqbiol:is>
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67 <rdf:Bag/>
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68 </bqbiol:is>
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69 </rdf:Description>
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70 <rdf:BRSynth rdf:about="#_2c27bb432be6149f648dcec0e702fd9bdf6449fb9f730bd86eeb0b63b93d8858">
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71 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
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72 <brsynth:smiles value="[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H]"/>
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73 <brsynth:inchi value="InChI=1S/C20H36O7P2/c1-17(2)9-6-10-18(3)11-7-12-19(4)13-8-14-20(5)15-16-26-29(24,25)27-28(21,22)23/h9,11,13,15H,6-8,10,12,14,16H2,1-5H3,(H,24,25)(H2,21,22,23)"/>
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74 <brsynth:inchikey value="OINNEUNVOZHBOX-UHFFFAOYSA-N"/>
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75 </brsynth:brsynth>
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76 </rdf:BRSynth>
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77 </rdf:RDF>
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78 </annotation>
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79 </species>
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80 <species metaid="a6e267be12defb7184259624f5adc519108c6c6adfe6be13f64b649567cb6df1" id="MNXM11" name="diphosphate" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
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81 <annotation>
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82 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
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83 <rdf:Description rdf:about="#a6e267be12defb7184259624f5adc519108c6c6adfe6be13f64b649567cb6df1">
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84 <bqbiol:is>
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85 <rdf:Bag/>
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86 </bqbiol:is>
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87 </rdf:Description>
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88 <rdf:BRSynth rdf:about="#a6e267be12defb7184259624f5adc519108c6c6adfe6be13f64b649567cb6df1">
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89 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
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90 <brsynth:smiles value="O=P(O)(O)OP(=O)(O)O"/>
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91 <brsynth:inchi value="InChI=1S/H4O7P2/c1-8(2,3)7-9(4,5)6/h(H2,1,2,3)(H2,4,5,6)"/>
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92 <brsynth:inchikey value="XPPKVPWEQAFLFU-UHFFFAOYSA-N"/>
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93 </brsynth:brsynth>
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94 </rdf:BRSynth>
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95 </rdf:RDF>
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96 </annotation>
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97 </species>
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98 <species metaid="_61841f05183ff06dbe77a0e01f6d73d7a890997d823ac18d9fd56bac3d4bcc39" id="MNXM24" name="MNXM24" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
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99 <annotation>
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100 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
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101 <rdf:Description rdf:about="#_61841f05183ff06dbe77a0e01f6d73d7a890997d823ac18d9fd56bac3d4bcc39">
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102 <bqbiol:is>
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103 <rdf:Bag/>
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104 </bqbiol:is>
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105 </rdf:Description>
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106 <rdf:BRSynth rdf:about="#_61841f05183ff06dbe77a0e01f6d73d7a890997d823ac18d9fd56bac3d4bcc39">
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107 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
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108 <brsynth:smiles/>
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109 <brsynth:inchi/>
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110 <brsynth:inchikey/>
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111 </brsynth:brsynth>
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112 </rdf:BRSynth>
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113 </rdf:RDF>
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114 </annotation>
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115 </species>
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116 <species metaid="_2f4b2d21d00b43a266620e821de533b08c3e42ff09ca008f915ca4400eb7d8c4" id="MNXM8975" name="MNXM8975" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
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117 <annotation>
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118 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
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119 <rdf:Description rdf:about="#_2f4b2d21d00b43a266620e821de533b08c3e42ff09ca008f915ca4400eb7d8c4">
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120 <bqbiol:is>
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121 <rdf:Bag/>
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122 </bqbiol:is>
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123 </rdf:Description>
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124 <rdf:BRSynth rdf:about="#_2f4b2d21d00b43a266620e821de533b08c3e42ff09ca008f915ca4400eb7d8c4">
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125 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
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126 <brsynth:smiles/>
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127 <brsynth:inchi/>
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128 <brsynth:inchikey/>
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129 </brsynth:brsynth>
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130 </rdf:BRSynth>
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131 </rdf:RDF>
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132 </annotation>
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133 </species>
0
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134 <species metaid="_10a025d408ecc91b5894e1d66d8a31d96e4ac530a63de61f99720be74086a29f" id="MNXM34" name="(2E,6E)-farnesyl diphosphate" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
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135 <annotation>
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136 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
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137 <rdf:Description rdf:about="#_10a025d408ecc91b5894e1d66d8a31d96e4ac530a63de61f99720be74086a29f">
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138 <bqbiol:is>
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139 <rdf:Bag/>
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140 </bqbiol:is>
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141 </rdf:Description>
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142 <rdf:BRSynth rdf:about="#_10a025d408ecc91b5894e1d66d8a31d96e4ac530a63de61f99720be74086a29f">
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143 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
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144 <brsynth:smiles value="[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H]"/>
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145 <brsynth:inchi value="InChI=1S/C15H28O7P2/c1-13(2)7-5-8-14(3)9-6-10-15(4)11-12-21-24(19,20)22-23(16,17)18/h7,9,11H,5-6,8,10,12H2,1-4H3,(H,19,20)(H2,16,17,18)"/>
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146 <brsynth:inchikey value="VWFJDQUYCIWHTN-UHFFFAOYSA-N"/>
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147 </brsynth:brsynth>
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148 </rdf:BRSynth>
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149 </rdf:RDF>
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150 </annotation>
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151 </species>
4
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152 <species metaid="b0098569a07f786a6e9b2294639668cd4ee564dd642a38bdf429c4c6bb560b46" id="CMPD_0000000001" name="CMPD_0000000001" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
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153 <annotation>
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154 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
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155 <rdf:Description rdf:about="#b0098569a07f786a6e9b2294639668cd4ee564dd642a38bdf429c4c6bb560b46">
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156 <bqbiol:is>
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157 <rdf:Bag/>
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158 </bqbiol:is>
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159 </rdf:Description>
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160 <rdf:BRSynth rdf:about="#b0098569a07f786a6e9b2294639668cd4ee564dd642a38bdf429c4c6bb560b46">
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161 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
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162 <brsynth:smiles value="[H]C(=C([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H]"/>
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163 <brsynth:inchi value="InChI=1S/C40H64/c1-33(2)19-13-23-37(7)27-17-31-39(9)29-15-25-35(5)21-11-12-22-36(6)26-16-30-40(10)32-18-28-38(8)24-14-20-34(3)4/h11-12,19-22,27-30H,13-18,23-26,31-32H2,1-10H3"/>
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164 <brsynth:inchikey value="YVLPJIGOMTXXLP-UHFFFAOYSA-N"/>
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165 </brsynth:brsynth>
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166 </rdf:BRSynth>
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167 </rdf:RDF>
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168 </annotation>
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169 </species>
0
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170 </listOfSpecies>
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171 <listOfParameters>
4
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172 <parameter metaid="dc937b59892604f5a86ac96936cd7ff09e25f18ae6b758e8014a24c7fa039e91" sboTerm="SBO:0000625" id="BRS_FBC_10000" value="10000" units="mmol_per_gDW_per_hr" constant="true"/>
0
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173 <parameter metaid="dc937b59892604f5a86ac96936cd7ff09e25f18ae6b758e8014a24c7fa039e91" sboTerm="SBO:0000625" id="BRS_FBC_0" value="0" units="mmol_per_gDW_per_hr" constant="true"/>
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174 </listOfParameters>
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175 <listOfReactions>
4
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176 <reaction metaid="_376841fa42ba139764a5509b9d817e2e540d0e228582c970025c73ae1ee77c0d" sboTerm="SBO:0000176" id="rxn_3" reversible="false" fast="false" fbc:lowerFluxBound="BRS_FBC_0" fbc:upperFluxBound="BRS_FBC_10000">
0
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177 <annotation>
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178 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
98d925a75257 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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181 <rdf:Bag>
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183 </rdf:Bag>
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184 </bqbiol:is>
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185 </rdf:Description>
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191 <brsynth:RR-02-ae41ec5771136ea5-14-F/>
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192 </brsynth:rule_ids>
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194 <brsynth:MNXR113128/>
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195 </brsynth:tmpl_rxn_ids>
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196 <brsynth:rule_score value="0.7358363677022237"/>
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198 </brsynth:brsynth>
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diff changeset
199 </rdf:BRSynth>
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diff changeset
200 </rdf:RDF>
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diff changeset
201 </annotation>
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diff changeset
202 <listOfReactants>
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diff changeset
203 <speciesReference species="CMPD_0000000001" stoichiometry="1" constant="true"/>
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diff changeset
204 <speciesReference species="MNXM8975" stoichiometry="4" constant="true"/>
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205 </listOfReactants>
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diff changeset
206 <listOfProducts>
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diff changeset
207 <speciesReference species="MNXM24" stoichiometry="4" constant="true"/>
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208 <speciesReference species="TARGET_0000000001" stoichiometry="1" constant="true"/>
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diff changeset
209 </listOfProducts>
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diff changeset
210 </reaction>
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212 <annotation>
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diff changeset
213 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
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215 <bqbiol:is>
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diff changeset
216 <rdf:Bag>
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diff changeset
217 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.32"/>
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219 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.96"/>
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220 </rdf:Bag>
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221 </bqbiol:is>
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222 </rdf:Description>
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223 <rdf:BRSynth rdf:about="#c9c2d56fd0ad9d5b8cd80acad4b5df22945ab4de50db7b24db52a91a7560c3ff">
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224 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
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226 <brsynth:rp2_transfo_id value="TRS_0_1_9"/>
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227 <brsynth:rule_ids>
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228 <brsynth:RR-02-bedda4e2f5001e0c-14-F/>
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229 </brsynth:rule_ids>
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230 <brsynth:tmpl_rxn_ids>
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diff changeset
231 <brsynth:MNXR111250/>
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232 <brsynth:MNXR111499/>
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233 <brsynth:MNXR113543/>
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234 <brsynth:MNXR118024/>
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235 <brsynth:MNXR139549/>
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236 </brsynth:tmpl_rxn_ids>
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diff changeset
237 <brsynth:rule_score value="0.5518755963407151"/>
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238 <brsynth:idx_in_path value="2"/>
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diff changeset
239 </brsynth:brsynth>
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diff changeset
240 </rdf:BRSynth>
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diff changeset
241 </rdf:RDF>
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diff changeset
242 </annotation>
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diff changeset
243 <listOfReactants>
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diff changeset
244 <speciesReference species="CMPD_0000000003" stoichiometry="1" constant="true"/>
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245 </listOfReactants>
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diff changeset
246 <listOfProducts>
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diff changeset
247 <speciesReference species="CMPD_0000000001" stoichiometry="1" constant="true"/>
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diff changeset
248 <speciesReference species="MNXM11" stoichiometry="2" constant="true"/>
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diff changeset
249 </listOfProducts>
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diff changeset
250 </reaction>
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e8d56cb2be03 planemo upload commit f40274f6b9f6a15eb4022aab21286d4c96cd8475-dirty
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parents: 1
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251 <reaction metaid="_7af1776cbbaecbf874d7f576d21891f6ad79e3b7c2e726cfd2ee9f5bd6f483c4" sboTerm="SBO:0000176" id="rxn_1" reversible="false" fast="false" fbc:lowerFluxBound="BRS_FBC_0" fbc:upperFluxBound="BRS_FBC_10000">
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252 <annotation>
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253 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
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255 <bqbiol:is>
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256 <rdf:Bag>
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257 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.92"/>
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262 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.88"/>
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263 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.-"/>
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264 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1"/>
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265 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.29"/>
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267 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.10"/>
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268 </rdf:Bag>
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269 </bqbiol:is>
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270 </rdf:Description>
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271 <rdf:BRSynth rdf:about="#_7af1776cbbaecbf874d7f576d21891f6ad79e3b7c2e726cfd2ee9f5bd6f483c4">
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272 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
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273 <brsynth:smiles value="[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H].[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])([H])C(=C([H])[H])C([H])([H])[H]&gt;&gt;[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H].O=P(O)(O)OP(=O)(O)O"/>
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274 <brsynth:rp2_transfo_id value="TRS_0_2_742"/>
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275 <brsynth:rule_ids>
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276 <brsynth:RR-02-07adee9ac9c42c7d-14-F/>
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277 <brsynth:RR-02-1494429c7e6e0694-14-F/>
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278 <brsynth:RR-02-1d50852f3f343682-14-F/>
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279 <brsynth:RR-02-3bf131230c6b2bf2-14-F/>
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280 <brsynth:RR-02-58d0f0d25e47b74a-14-F/>
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281 <brsynth:RR-02-b3db29f084fc7a81-14-F/>
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282 <brsynth:RR-02-f9759fe03c57b29f-14-F/>
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283 </brsynth:rule_ids>
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284 <brsynth:tmpl_rxn_ids>
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285 <brsynth:MNXR100137/>
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286 <brsynth:MNXR112247/>
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287 <brsynth:MNXR116653/>
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288 <brsynth:MNXR100621/>
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289 <brsynth:MNXR99634/>
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290 <brsynth:MNXR112069/>
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291 <brsynth:MNXR99650/>
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292 <brsynth:MNXR109677/>
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293 <brsynth:MNXR113141/>
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294 <brsynth:MNXR105052/>
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295 <brsynth:MNXR109713/>
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296 <brsynth:MNXR110950/>
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297 <brsynth:MNXR110952/>
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298 <brsynth:MNXR112246/>
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299 <brsynth:MNXR112250/>
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300 <brsynth:MNXR112251/>
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301 <brsynth:MNXR112252/>
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302 <brsynth:MNXR116656/>
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303 <brsynth:MNXR117266/>
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304 <brsynth:MNXR139515/>
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305 <brsynth:MNXR139637/>
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306 <brsynth:MNXR112249/>
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307 <brsynth:MNXR116655/>
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parents:
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308 <brsynth:MNXR103150/>
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309 <brsynth:MNXR112248/>
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310 <brsynth:MNXR116654/>
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tduigou
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311 </brsynth:tmpl_rxn_ids>
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diff changeset
312 <brsynth:rule_score value="0.7358363677022237"/>
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diff changeset
313 <brsynth:idx_in_path value="1"/>
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tduigou
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314 </brsynth:brsynth>
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tduigou
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315 </rdf:BRSynth>
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316 </rdf:RDF>
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317 </annotation>
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tduigou
parents:
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318 <listOfReactants>
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tduigou
parents:
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319 <speciesReference species="MNXM34" stoichiometry="1" constant="true"/>
98d925a75257 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
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320 <speciesReference species="MNXM83" stoichiometry="1" constant="true"/>
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tduigou
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321 </listOfReactants>
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322 <listOfProducts>
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tduigou
parents:
diff changeset
323 <speciesReference species="CMPD_0000000003" stoichiometry="1" constant="true"/>
98d925a75257 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
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324 <speciesReference species="MNXM11" stoichiometry="1" constant="true"/>
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325 </listOfProducts>
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326 </reaction>
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327 </listOfReactions>
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328 <groups:listOfGroups>
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diff changeset
329 <groups:group metaid="_93eef40c447d295fa61df9270c5fd909ec2ba7ee9883090552c0466873cd4299" groups:id="rp_pathway" groups:kind="collection">
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diff changeset
330 <annotation>
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diff changeset
331 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
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diff changeset
332 <rdf:BRSynth rdf:about="#_93eef40c447d295fa61df9270c5fd909ec2ba7ee9883090552c0466873cd4299">
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diff changeset
333 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
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diff changeset
334 <brsynth:global_score value="-1"/>
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diff changeset
335 </brsynth:brsynth>
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336 </rdf:BRSynth>
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diff changeset
337 </rdf:RDF>
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diff changeset
338 </annotation>
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339 <groups:listOfMembers>
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diff changeset
340 <groups:member groups:idRef="rxn_1"/>
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diff changeset
341 <groups:member groups:idRef="rxn_2"/>
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diff changeset
342 <groups:member groups:idRef="rxn_3"/>
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343 </groups:listOfMembers>
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344 </groups:group>
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345 <groups:group metaid="_613b064337553014ede418c67180137a4561ff11b13f3bfa1a2765ef37ac375a" groups:id="rp_intermediate_species" groups:kind="collection">
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diff changeset
346 <annotation>
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diff changeset
347 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
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348 <rdf:BRSynth rdf:about="#_613b064337553014ede418c67180137a4561ff11b13f3bfa1a2765ef37ac375a">
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349 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/>
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350 </rdf:BRSynth>
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351 </rdf:RDF>
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352 </annotation>
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353 <groups:listOfMembers>
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354 <groups:member groups:idRef="CMPD_0000000003"/>
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355 <groups:member groups:idRef="CMPD_0000000001"/>
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356 </groups:listOfMembers>
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357 </groups:group>
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358 <groups:group metaid="_564fce39b23c6cf87d12dc2c612448384fd2cd980fe3fc07829e2ef802645579" groups:id="rp_trunk_species" groups:kind="collection">
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diff changeset
359 <annotation>
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360 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
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361 <rdf:BRSynth rdf:about="#_564fce39b23c6cf87d12dc2c612448384fd2cd980fe3fc07829e2ef802645579">
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diff changeset
362 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/>
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363 </rdf:BRSynth>
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364 </rdf:RDF>
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365 </annotation>
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366 <groups:listOfMembers>
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e8d56cb2be03 planemo upload commit f40274f6b9f6a15eb4022aab21286d4c96cd8475-dirty
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367 <groups:member groups:idRef="MNXM83"/>
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368 <groups:member groups:idRef="TARGET_0000000001"/>
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369 <groups:member groups:idRef="CMPD_0000000003"/>
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370 <groups:member groups:idRef="MNXM34"/>
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e8d56cb2be03 planemo upload commit f40274f6b9f6a15eb4022aab21286d4c96cd8475-dirty
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diff changeset
371 <groups:member groups:idRef="CMPD_0000000001"/>
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372 </groups:listOfMembers>
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373 </groups:group>
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374 <groups:group metaid="_9e3154173c97366b3980dd1642e1e35d0bdfc3274abc744e89ecb518bcd48378" groups:id="rp_completed_species" groups:kind="collection">
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375 <annotation>
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376 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
98d925a75257 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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377 <rdf:BRSynth rdf:about="#_9e3154173c97366b3980dd1642e1e35d0bdfc3274abc744e89ecb518bcd48378">
98d925a75257 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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378 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/>
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379 </rdf:BRSynth>
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380 </rdf:RDF>
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381 </annotation>
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382 <groups:listOfMembers>
4
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parents: 1
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383 <groups:member groups:idRef="MNXM24"/>
1
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parents: 0
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384 <groups:member groups:idRef="MNXM11"/>
0
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385 <groups:member groups:idRef="MNXM8975"/>
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386 </groups:listOfMembers>
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387 </groups:group>
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388 <groups:group metaid="_58b3b59284e0d918d6d3f3bcadc2d757726da7594cd899cad4e745836ac967a3" groups:id="rp_sink_species" groups:kind="collection">
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389 <annotation>
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390 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
98d925a75257 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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391 <rdf:BRSynth rdf:about="#_58b3b59284e0d918d6d3f3bcadc2d757726da7594cd899cad4e745836ac967a3">
98d925a75257 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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392 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/>
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393 </rdf:BRSynth>
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394 </rdf:RDF>
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395 </annotation>
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396 <groups:listOfMembers>
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397 <groups:member groups:idRef="MNXM34"/>
0
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398 <groups:member groups:idRef="MNXM83"/>
4
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399 <groups:member groups:idRef="MNXM11"/>
0
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400 </groups:listOfMembers>
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401 </groups:group>
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402 </groups:listOfGroups>
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403 </model>
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404 </sbml>