comparison test-data/rp_003_0131.xml @ 0:98d925a75257 draft

"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
author tduigou
date Tue, 23 Nov 2021 13:45:45 +0000
parents
children b8242cf18cc0
comparison
equal deleted inserted replaced
-1:000000000000 0:98d925a75257
1 <?xml version="1.0" encoding="UTF-8"?>
2 <sbml xmlns="http://www.sbml.org/sbml/level3/version1/core" xmlns:groups="http://www.sbml.org/sbml/level3/version1/groups/version1" xmlns:fbc="http://www.sbml.org/sbml/level3/version1/fbc/version2" level="3" version="1" groups:required="false" fbc:required="false">
3 <model metaid="d5d4a5735e41ff2b063def8c757236e2e1a0f63c1dfee8baf1e79e81ce759172" id="RP_model_003_0131" name="003_0131" substanceUnits="mole" timeUnits="second" extentUnits="mole" fbc:strict="true">
4 <listOfCompartments>
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171 <listOfParameters>
172 <parameter metaid="dc937b59892604f5a86ac96936cd7ff09e25f18ae6b758e8014a24c7fa039e91" sboTerm="SBO:0000625" id="BRS_FBC_999999" value="999999" units="mmol_per_gDW_per_hr" constant="true"/>
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175 <listOfReactions>
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230 <brsynth:tmpl_rxn_ids>
231 <brsynth:MNXR111250/>
232 <brsynth:MNXR111499/>
233 <brsynth:MNXR113543/>
234 <brsynth:MNXR118024/>
235 <brsynth:MNXR139549/>
236 </brsynth:tmpl_rxn_ids>
237 <brsynth:rule_score value="0.5518755963407151"/>
238 <brsynth:idx_in_path value="2"/>
239 </brsynth:brsynth>
240 </rdf:BRSynth>
241 </rdf:RDF>
242 </annotation>
243 <listOfReactants>
244 <speciesReference species="CMPD_0000000003" stoichiometry="1" constant="true"/>
245 </listOfReactants>
246 <listOfProducts>
247 <speciesReference species="CMPD_0000000001" stoichiometry="1" constant="true"/>
248 <speciesReference species="MNXM11" stoichiometry="2" constant="true"/>
249 </listOfProducts>
250 </reaction>
251 <reaction metaid="_7af1776cbbaecbf874d7f576d21891f6ad79e3b7c2e726cfd2ee9f5bd6f483c4" sboTerm="SBO:0000176" id="rxn_1" reversible="false" fast="false" fbc:lowerFluxBound="BRS_FBC_0" fbc:upperFluxBound="BRS_FBC_999999">
252 <annotation>
253 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
254 <rdf:Description rdf:about="#_7af1776cbbaecbf874d7f576d21891f6ad79e3b7c2e726cfd2ee9f5bd6f483c4">
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257 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.92"/>
258 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.85"/>
259 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.84"/>
260 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.31"/>
261 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.81"/>
262 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.88"/>
263 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.-"/>
264 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1"/>
265 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.29"/>
266 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.68"/>
267 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.10"/>
268 </rdf:Bag>
269 </bqbiol:is>
270 </rdf:Description>
271 <rdf:BRSynth rdf:about="#_7af1776cbbaecbf874d7f576d21891f6ad79e3b7c2e726cfd2ee9f5bd6f483c4">
272 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
273 <brsynth:smiles value="[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H].[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])([H])C(=C([H])[H])C([H])([H])[H]&gt;&gt;[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H].O=P(O)(O)OP(=O)(O)O"/>
274 <brsynth:rp2_transfo_id value="TRS_0_2_742"/>
275 <brsynth:rule_ids>
276 <brsynth:RR-02-07adee9ac9c42c7d-14-F/>
277 <brsynth:RR-02-1494429c7e6e0694-14-F/>
278 <brsynth:RR-02-1d50852f3f343682-14-F/>
279 <brsynth:RR-02-3bf131230c6b2bf2-14-F/>
280 <brsynth:RR-02-58d0f0d25e47b74a-14-F/>
281 <brsynth:RR-02-b3db29f084fc7a81-14-F/>
282 <brsynth:RR-02-f9759fe03c57b29f-14-F/>
283 </brsynth:rule_ids>
284 <brsynth:tmpl_rxn_ids>
285 <brsynth:MNXR100137/>
286 <brsynth:MNXR112247/>
287 <brsynth:MNXR116653/>
288 <brsynth:MNXR100621/>
289 <brsynth:MNXR99634/>
290 <brsynth:MNXR112069/>
291 <brsynth:MNXR99650/>
292 <brsynth:MNXR109677/>
293 <brsynth:MNXR113141/>
294 <brsynth:MNXR105052/>
295 <brsynth:MNXR109713/>
296 <brsynth:MNXR110950/>
297 <brsynth:MNXR110952/>
298 <brsynth:MNXR112246/>
299 <brsynth:MNXR112250/>
300 <brsynth:MNXR112251/>
301 <brsynth:MNXR112252/>
302 <brsynth:MNXR116656/>
303 <brsynth:MNXR117266/>
304 <brsynth:MNXR139515/>
305 <brsynth:MNXR139637/>
306 <brsynth:MNXR112249/>
307 <brsynth:MNXR116655/>
308 <brsynth:MNXR103150/>
309 <brsynth:MNXR112248/>
310 <brsynth:MNXR116654/>
311 </brsynth:tmpl_rxn_ids>
312 <brsynth:rule_score value="0.7358363677022237"/>
313 <brsynth:idx_in_path value="1"/>
314 </brsynth:brsynth>
315 </rdf:BRSynth>
316 </rdf:RDF>
317 </annotation>
318 <listOfReactants>
319 <speciesReference species="MNXM34" stoichiometry="1" constant="true"/>
320 <speciesReference species="MNXM83" stoichiometry="1" constant="true"/>
321 </listOfReactants>
322 <listOfProducts>
323 <speciesReference species="CMPD_0000000003" stoichiometry="1" constant="true"/>
324 <speciesReference species="MNXM11" stoichiometry="1" constant="true"/>
325 </listOfProducts>
326 </reaction>
327 </listOfReactions>
328 <groups:listOfGroups>
329 <groups:group metaid="_93eef40c447d295fa61df9270c5fd909ec2ba7ee9883090552c0466873cd4299" groups:id="rp_pathway" groups:kind="collection">
330 <annotation>
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333 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
334 <brsynth:global_score value="-1"/>
335 </brsynth:brsynth>
336 </rdf:BRSynth>
337 </rdf:RDF>
338 </annotation>
339 <groups:listOfMembers>
340 <groups:member groups:idRef="rxn_1"/>
341 <groups:member groups:idRef="rxn_2"/>
342 <groups:member groups:idRef="rxn_3"/>
343 </groups:listOfMembers>
344 </groups:group>
345 <groups:group metaid="_613b064337553014ede418c67180137a4561ff11b13f3bfa1a2765ef37ac375a" groups:id="rp_intermediate_species" groups:kind="collection">
346 <annotation>
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349 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/>
350 </rdf:BRSynth>
351 </rdf:RDF>
352 </annotation>
353 <groups:listOfMembers>
354 <groups:member groups:idRef="CMPD_0000000001"/>
355 <groups:member groups:idRef="CMPD_0000000003"/>
356 </groups:listOfMembers>
357 </groups:group>
358 <groups:group metaid="_564fce39b23c6cf87d12dc2c612448384fd2cd980fe3fc07829e2ef802645579" groups:id="rp_trunk_species" groups:kind="collection">
359 <annotation>
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362 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/>
363 </rdf:BRSynth>
364 </rdf:RDF>
365 </annotation>
366 <groups:listOfMembers>
367 <groups:member groups:idRef="CMPD_0000000003"/>
368 <groups:member groups:idRef="MNXM83"/>
369 <groups:member groups:idRef="TARGET_0000000001"/>
370 <groups:member groups:idRef="MNXM34"/>
371 <groups:member groups:idRef="CMPD_0000000001"/>
372 </groups:listOfMembers>
373 </groups:group>
374 <groups:group metaid="_9e3154173c97366b3980dd1642e1e35d0bdfc3274abc744e89ecb518bcd48378" groups:id="rp_completed_species" groups:kind="collection">
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377 <rdf:BRSynth rdf:about="#_9e3154173c97366b3980dd1642e1e35d0bdfc3274abc744e89ecb518bcd48378">
378 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/>
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380 </rdf:RDF>
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382 <groups:listOfMembers>
383 <groups:member groups:idRef="MNXM36"/>
384 <groups:member groups:idRef="MNXM8975"/>
385 <groups:member groups:idRef="MNXM11"/>
386 </groups:listOfMembers>
387 </groups:group>
388 <groups:group metaid="_58b3b59284e0d918d6d3f3bcadc2d757726da7594cd899cad4e745836ac967a3" groups:id="rp_sink_species" groups:kind="collection">
389 <annotation>
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392 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/>
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397 <groups:member groups:idRef="MNXM34"/>
398 <groups:member groups:idRef="MNXM11"/>
399 <groups:member groups:idRef="MNXM83"/>
400 </groups:listOfMembers>
401 </groups:group>
402 </groups:listOfGroups>
403 </model>
404 </sbml>