Mercurial > repos > tduigou > rpcompletion

comparison test-data/rp_001_0011.xml @ 1:b8242cf18cc0 draft

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"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
author tduigou
date Wed, 09 Feb 2022 16:05:48 +0000
parents 98d925a75257
children e8d56cb2be03
comparison
equal deleted inserted replaced
0:98d925a75257 1:b8242cf18cc0
21 </rdf:RDF> 21 </rdf:RDF>
22 </annotation> 22 </annotation>
23 </compartment> 23 </compartment>
24 </listOfCompartments> 24 </listOfCompartments>
25 <listOfSpecies> 25 <listOfSpecies>
26 <species metaid="a6e267be12defb7184259624f5adc519108c6c6adfe6be13f64b649567cb6df1" id="MNXM11" name="diphosphate" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
27 <annotation>
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30 <bqbiol:is>
31 <rdf:Bag/>
32 </bqbiol:is>
33 </rdf:Description>
34 <rdf:BRSynth rdf:about="#a6e267be12defb7184259624f5adc519108c6c6adfe6be13f64b649567cb6df1">
35 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
36 <brsynth:smiles value="O=P(O)(O)OP(=O)(O)O"/>
37 <brsynth:inchi value="InChI=1S/H4O7P2/c1-8(2,3)7-9(4,5)6/h(H2,1,2,3)(H2,4,5,6)"/>
38 <brsynth:inchikey value="XPPKVPWEQAFLFU-UHFFFAOYSA-N"/>
39 </brsynth:brsynth>
40 </rdf:BRSynth>
41 </rdf:RDF>
42 </annotation>
43 </species>
44 <species metaid="_212c5940beac5625a2636d3d14fbc63cc5a8107d9dd39020ac544f296debabcc" id="MNXM132" name="dimethylallyl diphosphate" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
45 <annotation>
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47 <rdf:Description rdf:about="#_212c5940beac5625a2636d3d14fbc63cc5a8107d9dd39020ac544f296debabcc">
48 <bqbiol:is>
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52 <rdf:BRSynth rdf:about="#_212c5940beac5625a2636d3d14fbc63cc5a8107d9dd39020ac544f296debabcc">
53 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
54 <brsynth:smiles value="[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H]"/>
55 <brsynth:inchi value="InChI=1S/C5H12O7P2/c1-5(2)3-4-11-14(9,10)12-13(6,7)8/h3H,4H2,1-2H3,(H,9,10)(H2,6,7,8)"/>
56 <brsynth:inchikey value="CBIDRCWHNCKSTO-UHFFFAOYSA-N"/>
57 </brsynth:brsynth>
58 </rdf:BRSynth>
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62 <species metaid="_6817bb5f7133f50744b232330f1f3009343f785b8f77602ce5f44cdd9458f002" id="TARGET_0000000001" name="TARGET_0000000001" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
63 <annotation>
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71 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
72 <brsynth:smiles value="[H]C(=C([H])C([H])=C(C([H])=C([H])C([H])=C(C([H])=C([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H])C([H])([H])[H])C([H])([H])[H])C([H])=C(C([H])=C([H])C([H])=C(C([H])=C([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H])C([H])([H])[H])C([H])([H])[H]"/>
73 <brsynth:inchi value="InChI=1S/C40H56/c1-33(2)19-13-23-37(7)27-17-31-39(9)29-15-25-35(5)21-11-12-22-36(6)26-16-30-40(10)32-18-28-38(8)24-14-20-34(3)4/h11-12,15-22,25-32H,13-14,23-24H2,1-10H3"/>
74 <brsynth:inchikey value="OAIJSZIZWZSQBC-UHFFFAOYSA-N"/>
75 </brsynth:brsynth>
76 </rdf:BRSynth>
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80 <species metaid="_61841f05183ff06dbe77a0e01f6d73d7a890997d823ac18d9fd56bac3d4bcc39" id="MNXM24" name="MNXM24" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
81 <annotation>
82 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
83 <rdf:Description rdf:about="#_61841f05183ff06dbe77a0e01f6d73d7a890997d823ac18d9fd56bac3d4bcc39">
84 <bqbiol:is>
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89 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
90 <brsynth:smiles/>
91 <brsynth:inchi/>
92 <brsynth:inchikey/>
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95 </rdf:RDF>
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98 <species metaid="_53be86b11fa13c25dcb440bba6ef77b51b257a3674e6b2a0b88d272dc0a014cb" id="MNXM35" name="MNXM35" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
99 <annotation>
100 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
101 <rdf:Description rdf:about="#_53be86b11fa13c25dcb440bba6ef77b51b257a3674e6b2a0b88d272dc0a014cb">
102 <bqbiol:is>
103 <rdf:Bag/>
104 </bqbiol:is>
105 </rdf:Description>
106 <rdf:BRSynth rdf:about="#_53be86b11fa13c25dcb440bba6ef77b51b257a3674e6b2a0b88d272dc0a014cb">
107 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
108 <brsynth:smiles/>
109 <brsynth:inchi/>
110 <brsynth:inchikey/>
111 </brsynth:brsynth>
112 </rdf:BRSynth>
113 </rdf:RDF>
114 </annotation>
115 </species>
116 <species metaid="b0098569a07f786a6e9b2294639668cd4ee564dd642a38bdf429c4c6bb560b46" id="CMPD_0000000001" name="CMPD_0000000001" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
117 <annotation>
118 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
119 <rdf:Description rdf:about="#b0098569a07f786a6e9b2294639668cd4ee564dd642a38bdf429c4c6bb560b46">
120 <bqbiol:is>
121 <rdf:Bag/>
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125 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
126 <brsynth:smiles value="[H]C(=C([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H]"/>
127 <brsynth:inchi value="InChI=1S/C40H64/c1-33(2)19-13-23-37(7)27-17-31-39(9)29-15-25-35(5)21-11-12-22-36(6)26-16-30-40(10)32-18-28-38(8)24-14-20-34(3)4/h11-12,19-22,27-30H,13-18,23-26,31-32H2,1-10H3"/>
128 <brsynth:inchikey value="YVLPJIGOMTXXLP-UHFFFAOYSA-N"/>
129 </brsynth:brsynth>
130 </rdf:BRSynth>
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134 <species metaid="_47d72a86d31940edf1cc42c7a7361a7a96211dc2a6679326b8ad27a7e216ada0" id="MNXM83" name="isopentenyl diphosphate" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
135 <annotation>
136 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
137 <rdf:Description rdf:about="#_47d72a86d31940edf1cc42c7a7361a7a96211dc2a6679326b8ad27a7e216ada0">
138 <bqbiol:is>
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142 <rdf:BRSynth rdf:about="#_47d72a86d31940edf1cc42c7a7361a7a96211dc2a6679326b8ad27a7e216ada0">
143 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
144 <brsynth:smiles value="[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])([H])C(=C([H])[H])C([H])([H])[H]"/>
145 <brsynth:inchi value="InChI=1S/C5H12O7P2/c1-5(2)3-4-11-14(9,10)12-13(6,7)8/h1,3-4H2,2H3,(H,9,10)(H2,6,7,8)"/>
146 <brsynth:inchikey value="NUHSROFQTUXZQQ-UHFFFAOYSA-N"/>
147 </brsynth:brsynth>
148 </rdf:BRSynth>
149 </rdf:RDF>
150 </annotation>
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26 <species metaid="_2c27bb432be6149f648dcec0e702fd9bdf6449fb9f730bd86eeb0b63b93d8858" id="CMPD_0000000003" name="CMPD_0000000003" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"> 152 <species metaid="_2c27bb432be6149f648dcec0e702fd9bdf6449fb9f730bd86eeb0b63b93d8858" id="CMPD_0000000003" name="CMPD_0000000003" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
27 <annotation> 153 <annotation>
28 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> 154 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
29 <rdf:Description rdf:about="#_2c27bb432be6149f648dcec0e702fd9bdf6449fb9f730bd86eeb0b63b93d8858"> 155 <rdf:Description rdf:about="#_2c27bb432be6149f648dcec0e702fd9bdf6449fb9f730bd86eeb0b63b93d8858">
30 <bqbiol:is> 156 <bqbiol:is>
34 <rdf:BRSynth rdf:about="#_2c27bb432be6149f648dcec0e702fd9bdf6449fb9f730bd86eeb0b63b93d8858"> 160 <rdf:BRSynth rdf:about="#_2c27bb432be6149f648dcec0e702fd9bdf6449fb9f730bd86eeb0b63b93d8858">
35 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"> 161 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
36 <brsynth:smiles value="[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H]"/> 162 <brsynth:smiles value="[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H]"/>
37 <brsynth:inchi value="InChI=1S/C20H36O7P2/c1-17(2)9-6-10-18(3)11-7-12-19(4)13-8-14-20(5)15-16-26-29(24,25)27-28(21,22)23/h9,11,13,15H,6-8,10,12,14,16H2,1-5H3,(H,24,25)(H2,21,22,23)"/> 163 <brsynth:inchi value="InChI=1S/C20H36O7P2/c1-17(2)9-6-10-18(3)11-7-12-19(4)13-8-14-20(5)15-16-26-29(24,25)27-28(21,22)23/h9,11,13,15H,6-8,10,12,14,16H2,1-5H3,(H,24,25)(H2,21,22,23)"/>
38 <brsynth:inchikey value="OINNEUNVOZHBOX-UHFFFAOYSA-N"/> 164 <brsynth:inchikey value="OINNEUNVOZHBOX-UHFFFAOYSA-N"/>
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44 <species metaid="_47d72a86d31940edf1cc42c7a7361a7a96211dc2a6679326b8ad27a7e216ada0" id="MNXM83" name="isopentenyl diphosphate" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
45 <annotation>
46 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
47 <rdf:Description rdf:about="#_47d72a86d31940edf1cc42c7a7361a7a96211dc2a6679326b8ad27a7e216ada0">
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52 <rdf:BRSynth rdf:about="#_47d72a86d31940edf1cc42c7a7361a7a96211dc2a6679326b8ad27a7e216ada0">
53 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
54 <brsynth:smiles value="[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])([H])C(=C([H])[H])C([H])([H])[H]"/>
55 <brsynth:inchi value="InChI=1S/C5H12O7P2/c1-5(2)3-4-11-14(9,10)12-13(6,7)8/h1,3-4H2,2H3,(H,9,10)(H2,6,7,8)"/>
56 <brsynth:inchikey value="NUHSROFQTUXZQQ-UHFFFAOYSA-N"/>
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62 <species metaid="_6817bb5f7133f50744b232330f1f3009343f785b8f77602ce5f44cdd9458f002" id="TARGET_0000000001" name="TARGET_0000000001" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
63 <annotation>
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73 <brsynth:inchi value="InChI=1S/C40H56/c1-33(2)19-13-23-37(7)27-17-31-39(9)29-15-25-35(5)21-11-12-22-36(6)26-16-30-40(10)32-18-28-38(8)24-14-20-34(3)4/h11-12,15-22,25-32H,13-14,23-24H2,1-10H3"/>
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89 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
90 <brsynth:smiles value="O=P(O)(O)OP(=O)(O)O"/>
91 <brsynth:inchi value="InChI=1S/H4O7P2/c1-8(2,3)7-9(4,5)6/h(H2,1,2,3)(H2,4,5,6)"/>
92 <brsynth:inchikey value="XPPKVPWEQAFLFU-UHFFFAOYSA-N"/>
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98 <species metaid="_212c5940beac5625a2636d3d14fbc63cc5a8107d9dd39020ac544f296debabcc" id="MNXM132" name="dimethylallyl diphosphate" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
99 <annotation>
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102 <bqbiol:is>
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109 <brsynth:inchi value="InChI=1S/C5H12O7P2/c1-5(2)3-4-11-14(9,10)12-13(6,7)8/h3H,4H2,1-2H3,(H,9,10)(H2,6,7,8)"/>
110 <brsynth:inchikey value="CBIDRCWHNCKSTO-UHFFFAOYSA-N"/>
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116 <species metaid="b0098569a07f786a6e9b2294639668cd4ee564dd642a38bdf429c4c6bb560b46" id="CMPD_0000000001" name="CMPD_0000000001" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
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125 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
126 <brsynth:smiles value="[H]C(=C([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H]"/>
127 <brsynth:inchi value="InChI=1S/C40H64/c1-33(2)19-13-23-37(7)27-17-31-39(9)29-15-25-35(5)21-11-12-22-36(6)26-16-30-40(10)32-18-28-38(8)24-14-20-34(3)4/h11-12,19-22,27-30H,13-18,23-26,31-32H2,1-10H3"/>
128 <brsynth:inchikey value="YVLPJIGOMTXXLP-UHFFFAOYSA-N"/>
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134 <species metaid="_53be86b11fa13c25dcb440bba6ef77b51b257a3674e6b2a0b88d272dc0a014cb" id="MNXM35" name="MNXM35" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
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152 <species metaid="_61841f05183ff06dbe77a0e01f6d73d7a890997d823ac18d9fd56bac3d4bcc39" id="MNXM24" name="MNXM24" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
153 <annotation>
154 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
155 <rdf:Description rdf:about="#_61841f05183ff06dbe77a0e01f6d73d7a890997d823ac18d9fd56bac3d4bcc39">
156 <bqbiol:is>
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160 <rdf:BRSynth rdf:about="#_61841f05183ff06dbe77a0e01f6d73d7a890997d823ac18d9fd56bac3d4bcc39">
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163 <brsynth:inchi/>
164 <brsynth:inchikey/>
165 </brsynth:brsynth> 165 </brsynth:brsynth>
166 </rdf:BRSynth> 166 </rdf:BRSynth>
167 </rdf:RDF> 167 </rdf:RDF>
168 </annotation> 168 </annotation>
169 </species> 169 </species>
308 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/> 308 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/>
309 </rdf:BRSynth> 309 </rdf:BRSynth>
310 </rdf:RDF> 310 </rdf:RDF>
311 </annotation> 311 </annotation>
312 <groups:listOfMembers> 312 <groups:listOfMembers>
313 <groups:member groups:idRef="CMPD_0000000003"/>
313 <groups:member groups:idRef="CMPD_0000000001"/> 314 <groups:member groups:idRef="CMPD_0000000001"/>
314 <groups:member groups:idRef="CMPD_0000000003"/>
315 </groups:listOfMembers> 315 </groups:listOfMembers>
316 </groups:group> 316 </groups:group>
317 <groups:group metaid="_564fce39b23c6cf87d12dc2c612448384fd2cd980fe3fc07829e2ef802645579" groups:id="rp_trunk_species" groups:kind="collection"> 317 <groups:group metaid="_564fce39b23c6cf87d12dc2c612448384fd2cd980fe3fc07829e2ef802645579" groups:id="rp_trunk_species" groups:kind="collection">
318 <annotation> 318 <annotation>
319 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> 319 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
321 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/> 321 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/>
322 </rdf:BRSynth> 322 </rdf:BRSynth>
323 </rdf:RDF> 323 </rdf:RDF>
324 </annotation> 324 </annotation>
325 <groups:listOfMembers> 325 <groups:listOfMembers>
326 <groups:member groups:idRef="MNXM132"/>
327 <groups:member groups:idRef="TARGET_0000000001"/>
328 <groups:member groups:idRef="CMPD_0000000001"/>
329 <groups:member groups:idRef="MNXM83"/>
326 <groups:member groups:idRef="CMPD_0000000003"/> 330 <groups:member groups:idRef="CMPD_0000000003"/>
327 <groups:member groups:idRef="MNXM83"/>
328 <groups:member groups:idRef="TARGET_0000000001"/>
329 <groups:member groups:idRef="MNXM132"/>
330 <groups:member groups:idRef="CMPD_0000000001"/>
331 </groups:listOfMembers> 331 </groups:listOfMembers>
332 </groups:group> 332 </groups:group>
333 <groups:group metaid="_9e3154173c97366b3980dd1642e1e35d0bdfc3274abc744e89ecb518bcd48378" groups:id="rp_completed_species" groups:kind="collection"> 333 <groups:group metaid="_9e3154173c97366b3980dd1642e1e35d0bdfc3274abc744e89ecb518bcd48378" groups:id="rp_completed_species" groups:kind="collection">
334 <annotation> 334 <annotation>
335 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> 335 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
351 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/> 351 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/>
352 </rdf:BRSynth> 352 </rdf:BRSynth>
353 </rdf:RDF> 353 </rdf:RDF>
354 </annotation> 354 </annotation>
355 <groups:listOfMembers> 355 <groups:listOfMembers>
356 <groups:member groups:idRef="MNXM132"/>
357 <groups:member groups:idRef="MNXM11"/>
356 <groups:member groups:idRef="MNXM83"/> 358 <groups:member groups:idRef="MNXM83"/>
357 <groups:member groups:idRef="MNXM11"/>
358 <groups:member groups:idRef="MNXM132"/>
359 </groups:listOfMembers> 359 </groups:listOfMembers>
360 </groups:group> 360 </groups:group>
361 </groups:listOfGroups> 361 </groups:listOfGroups>
362 </model> 362 </model>
363 </sbml> 363 </sbml>