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comparison rpranker.xml @ 1:bab690866445 draft

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"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
author tduigou
date Tue, 15 Feb 2022 13:26:44 +0000
parents e95370d2e5f9
children ebbdb240c507
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0:e95370d2e5f9 1:bab690866445
1 <tool id="rpranker" name="Rank Pathways" version="5.10.0"> 1 <tool id="rpranker" name="Rank Pathways" version="@TOOL_VERSION@">
2 <description>Rank heterologous pathways according to their global score</description> 2 <description>Rank heterologous pathways according to their global score</description>
3 <macros>
4 <token name="@TOOL_VERSION@">5.12.1</token>
5 </macros>
3 <requirements> 6 <requirements>
4 <requirement type="package" version="5.10.0">rptools</requirement> 7 <requirement type="package" version="@TOOL_VERSION@">rptools</requirement>
5 </requirements> 8 </requirements>
6 <stdio> 9 <stdio>
7 <regex match="WARNING" level="warning" /> 10 <regex match="WARNING" level="warning" />
8 <regex match="ERROR" level="fatal" /> 11 <regex match="ERROR" level="fatal" />
9 </stdio> 12 </stdio>
10 <command detect_errors="exit_code"><![CDATA[ 13 <command detect_errors="exit_code"><![CDATA[
11 python -m rptools.rprank 14 python -m rptools.rprank
12 --pathways 15 --pathways
13 #for $input in $pathway_collection 16 #for $input in $pathway_collection
14 '$input' 17 '$input'
15 #end for 18 #end for
16 > '$sorted_pathways' 19 > '$sorted_pathways'
17 ]]></command> 20 ]]></command>
18 <inputs> 21 <inputs>
19 <param name="pathway_collection" type="data_collection" collection_type="list" label="Pathways" /> 22 <param name="pathway_collection" type="data_collection" format="xml" collection_type="list" label="Pathways" />
20 </inputs> 23 </inputs>
21 <outputs> 24 <outputs>
22 <data name="sorted_pathways" format="csv" label="Ranked Pathways" /> 25 <data name="sorted_pathways" format="csv" label="Ranked Pathways" />
23 </outputs> 26 </outputs>
24 <tests> 27 <tests>
64 * `GitHub <https://github.com/brsynth/rptools/tree/master/rptools/rprank>`_ 67 * `GitHub <https://github.com/brsynth/rptools/tree/master/rptools/rprank>`_
65 68
66 Version 69 Version
67 ---------- 70 ----------
68 71
69 5.10.0 72 5.12.1
70 73
71 License 74 License
72 ------- 75 -------
73 76
74 * `MIT <https://github.com/brsynth/rptools/blob/master/LICENSE>`_ 77 * `MIT <https://github.com/brsynth/rptools/blob/master/LICENSE>`_