Mercurial > repos > tduigou > rpranker
comparison rpranker.xml @ 1:bab690866445 draft
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
author | tduigou |
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date | Tue, 15 Feb 2022 13:26:44 +0000 |
parents | e95370d2e5f9 |
children | ebbdb240c507 |
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0:e95370d2e5f9 | 1:bab690866445 |
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1 <tool id="rpranker" name="Rank Pathways" version="5.10.0"> | 1 <tool id="rpranker" name="Rank Pathways" version="@TOOL_VERSION@"> |
2 <description>Rank heterologous pathways according to their global score</description> | 2 <description>Rank heterologous pathways according to their global score</description> |
3 <macros> | |
4 <token name="@TOOL_VERSION@">5.12.1</token> | |
5 </macros> | |
3 <requirements> | 6 <requirements> |
4 <requirement type="package" version="5.10.0">rptools</requirement> | 7 <requirement type="package" version="@TOOL_VERSION@">rptools</requirement> |
5 </requirements> | 8 </requirements> |
6 <stdio> | 9 <stdio> |
7 <regex match="WARNING" level="warning" /> | 10 <regex match="WARNING" level="warning" /> |
8 <regex match="ERROR" level="fatal" /> | 11 <regex match="ERROR" level="fatal" /> |
9 </stdio> | 12 </stdio> |
10 <command detect_errors="exit_code"><![CDATA[ | 13 <command detect_errors="exit_code"><![CDATA[ |
11 python -m rptools.rprank | 14 python -m rptools.rprank |
12 --pathways | 15 --pathways |
13 #for $input in $pathway_collection | 16 #for $input in $pathway_collection |
14 '$input' | 17 '$input' |
15 #end for | 18 #end for |
16 > '$sorted_pathways' | 19 > '$sorted_pathways' |
17 ]]></command> | 20 ]]></command> |
18 <inputs> | 21 <inputs> |
19 <param name="pathway_collection" type="data_collection" collection_type="list" label="Pathways" /> | 22 <param name="pathway_collection" type="data_collection" format="xml" collection_type="list" label="Pathways" /> |
20 </inputs> | 23 </inputs> |
21 <outputs> | 24 <outputs> |
22 <data name="sorted_pathways" format="csv" label="Ranked Pathways" /> | 25 <data name="sorted_pathways" format="csv" label="Ranked Pathways" /> |
23 </outputs> | 26 </outputs> |
24 <tests> | 27 <tests> |
64 * `GitHub <https://github.com/brsynth/rptools/tree/master/rptools/rprank>`_ | 67 * `GitHub <https://github.com/brsynth/rptools/tree/master/rptools/rprank>`_ |
65 | 68 |
66 Version | 69 Version |
67 ---------- | 70 ---------- |
68 | 71 |
69 5.10.0 | 72 5.12.1 |
70 | 73 |
71 License | 74 License |
72 ------- | 75 ------- |
73 | 76 |
74 * `MIT <https://github.com/brsynth/rptools/blob/master/LICENSE>`_ | 77 * `MIT <https://github.com/brsynth/rptools/blob/master/LICENSE>`_ |