comparison test-data/rp_001_0006.xml @ 0:e95370d2e5f9 draft

"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
author tduigou
date Mon, 13 Dec 2021 18:19:24 +0000
parents
children
comparison
equal deleted inserted replaced
-1:000000000000 0:e95370d2e5f9
1 <?xml version="1.0" encoding="UTF-8"?>
2 <sbml xmlns="http://www.sbml.org/sbml/level3/version1/core" xmlns:groups="http://www.sbml.org/sbml/level3/version1/groups/version1" xmlns:fbc="http://www.sbml.org/sbml/level3/version1/fbc/version2" level="3" version="1" groups:required="false" fbc:required="false">
3 <model metaid="_9abfd4c46acaab90583da6a3a85bb5000b25ca6dcac80825140a206a3c167d09" id="RP_model_001_0006" name="001_0006" substanceUnits="mole" timeUnits="second" extentUnits="mole" fbc:strict="true">
4 <listOfCompartments>
5 <compartment metaid="_2e7d2c03a9507ae265ecf5b5356885a53393a2029d241394997265a1a25aefc6" sboTerm="SBO:0000290" id="c" name="cytosol" size="1" constant="true">
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9 <bqbiol:is>
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11 <rdf:li rdf:resource="http://identifiers.org/bigg.compartment/c"/>
12 <rdf:li rdf:resource="http://identifiers.org/bigg.compartment/c_c"/>
13 <rdf:li rdf:resource="http://identifiers.org/metanetx.compartment/MNXC3"/>
14 <rdf:li rdf:resource="http://identifiers.org/seed/c"/>
15 <rdf:li rdf:resource="http://identifiers.org/seed/c0"/>
16 <rdf:li rdf:resource="http://identifiers.org/seed/cytosol"/>
17 <rdf:li rdf:resource="http://identifiers.org/name/cytosol"/>
18 </rdf:Bag>
19 </bqbiol:is>
20 </rdf:Description>
21 </rdf:RDF>
22 </annotation>
23 </compartment>
24 </listOfCompartments>
25 <listOfSpecies>
26 <species metaid="_6817bb5f7133f50744b232330f1f3009343f785b8f77602ce5f44cdd9458f002" id="TARGET_0000000001" name="TARGET_0000000001" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
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101 <brsynth:thermo_standard_dg_formation>
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153 </brsynth:fba_biomass_shadow_price>
154 <brsynth:fba_fraction_shadow_price>
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157 <brsynth:thermo_standard_dg_formation>
158 <brsynth:value value="-2261.3806478863044"/>
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210 <brsynth:fba_fraction_shadow_price>
211 <brsynth:value value="None"/>
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213 <brsynth:thermo_standard_dg_formation>
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215 <brsynth:units value="kilojoule / mole"/>
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234 <brsynth:inchikey value="NUHSROFQTUXZQQ-UHFFFAOYSA-N"/>
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249 </species>
250 </listOfSpecies>
251 <listOfParameters>
252 <parameter metaid="dc937b59892604f5a86ac96936cd7ff09e25f18ae6b758e8014a24c7fa039e91" sboTerm="SBO:0000625" id="BRS_FBC_10000_0" value="10000" constant="true"/>
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254 </listOfParameters>
255 <listOfReactions>
256 <reaction metaid="_7af1776cbbaecbf874d7f576d21891f6ad79e3b7c2e726cfd2ee9f5bd6f483c4" sboTerm="SBO:0000176" id="rxn_1" reversible="false" fast="false" fbc:lowerFluxBound="BRS_FBC_0_0" fbc:upperFluxBound="BRS_FBC_10000_0">
257 <annotation>
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260 <bqbiol:is>
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266 <rdf:BRSynth rdf:about="#_7af1776cbbaecbf874d7f576d21891f6ad79e3b7c2e726cfd2ee9f5bd6f483c4">
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269 <brsynth:rp2_transfo_id value="TRS_0_2_739"/>
270 <brsynth:rule_ids>
271 <brsynth:RR-02-90bcfd187709eb1b-14-F/>
272 </brsynth:rule_ids>
273 <brsynth:tmpl_rxn_ids>
274 <brsynth:MNXR132232/>
275 </brsynth:tmpl_rxn_ids>
276 <brsynth:rule_score value="0.5706379442030705"/>
277 <brsynth:idx_in_path value="1"/>
278 <brsynth:selenzy/>
279 <brsynth:fba_biomass>
280 <brsynth:value value="0.0"/>
281 <brsynth:units value="gDW / gDW / hour"/>
282 </brsynth:fba_biomass>
283 <brsynth:fba_fraction>
284 <brsynth:value value="0.9388532834589367"/>
285 <brsynth:units value="milimole / gDW / hour"/>
286 </brsynth:fba_fraction>
287 <brsynth:thermo_dG0_prime>
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290 <brsynth:units value="kilojoule / mole"/>
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292 <brsynth:thermo_dGm_prime>
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295 <brsynth:units value="kilojoule / mole"/>
296 </brsynth:thermo_dGm_prime>
297 <brsynth:thermo_dG_prime>
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299 <brsynth:error value="7.250256007547839"/>
300 <brsynth:units value="kilojoule / mole"/>
301 </brsynth:thermo_dG_prime>
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304 <brsynth:error value="7.250256007547839"/>
305 <brsynth:units value="kilojoule / mole"/>
306 </brsynth:thermo_dG>
307 </brsynth:brsynth>
308 </rdf:BRSynth>
309 </rdf:RDF>
310 </annotation>
311 <listOfReactants>
312 <speciesReference species="MNXM132" stoichiometry="1" constant="true"/>
313 <speciesReference species="MNXM83" stoichiometry="1" constant="true"/>
314 </listOfReactants>
315 <listOfProducts>
316 <speciesReference species="CMPD_0000000003" stoichiometry="1" constant="true"/>
317 <speciesReference species="MNXM11" stoichiometry="3" constant="true"/>
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319 </reaction>
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342 <brsynth:MNXR113543/>
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360 <brsynth:units value="kilojoule / mole"/>
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362 <brsynth:thermo_dGm_prime>
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365 <brsynth:units value="kilojoule / mole"/>
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375 <brsynth:units value="kilojoule / mole"/>
376 </brsynth:thermo_dG>
377 </brsynth:brsynth>
378 </rdf:BRSynth>
379 </rdf:RDF>
380 </annotation>
381 <listOfReactants>
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383 </listOfReactants>
384 <listOfProducts>
385 <speciesReference species="CMPD_0000000001" stoichiometry="1" constant="true"/>
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450 <speciesReference species="TARGET_0000000001" stoichiometry="1" constant="true"/>
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452 </reaction>
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580 <groups:member groups:idRef="MNXM8975"/>
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584 </model>
585 </sbml>