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comparison test-data/rp_002_0011.xml @ 0:e95370d2e5f9 draft

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"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
author tduigou
date Mon, 13 Dec 2021 18:19:24 +0000
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-1:000000000000 0:e95370d2e5f9
1 <?xml version="1.0" encoding="UTF-8"?>
2 <sbml xmlns="http://www.sbml.org/sbml/level3/version1/core" xmlns:groups="http://www.sbml.org/sbml/level3/version1/groups/version1" xmlns:fbc="http://www.sbml.org/sbml/level3/version1/fbc/version2" level="3" version="1" groups:required="false" fbc:required="false">
3 <model metaid="b8c1523a13bf5120b604ab91344086ae4f6519e7153eba9eeacb319187964033" id="RP_model_002_0011" name="002_0011" substanceUnits="mole" timeUnits="second" extentUnits="mole" fbc:strict="true">
4 <listOfCompartments>
5 <compartment metaid="_2e7d2c03a9507ae265ecf5b5356885a53393a2029d241394997265a1a25aefc6" sboTerm="SBO:0000290" id="c" name="cytosol" size="1" constant="true">
6 <annotation>
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9 <bqbiol:is>
10 <rdf:Bag>
11 <rdf:li rdf:resource="http://identifiers.org/bigg.compartment/c"/>
12 <rdf:li rdf:resource="http://identifiers.org/bigg.compartment/c_c"/>
13 <rdf:li rdf:resource="http://identifiers.org/metanetx.compartment/MNXC3"/>
14 <rdf:li rdf:resource="http://identifiers.org/seed/c"/>
15 <rdf:li rdf:resource="http://identifiers.org/seed/c0"/>
16 <rdf:li rdf:resource="http://identifiers.org/seed/cytosol"/>
17 <rdf:li rdf:resource="http://identifiers.org/name/cytosol"/>
18 </rdf:Bag>
19 </bqbiol:is>
20 </rdf:Description>
21 </rdf:RDF>
22 </annotation>
23 </compartment>
24 </listOfCompartments>
25 <listOfSpecies>
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93 <brsynth:inchi value="InChI=1S/C40H64/c1-33(2)19-13-23-37(7)27-17-31-39(9)29-15-25-35(5)21-11-12-22-36(6)26-16-30-40(10)32-18-28-38(8)24-14-20-34(3)4/h11-12,19-22,27-30H,13-18,23-26,31-32H2,1-10H3"/>
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129 <brsynth:thermo_standard_dg_formation>
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131 <brsynth:units value="kilojoule / mole"/>
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136 </annotation>
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150 <brsynth:inchikey value="NUHSROFQTUXZQQ-UHFFFAOYSA-N"/>
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157 <brsynth:thermo_standard_dg_formation>
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178 <brsynth:inchikey value="GVVPGTZRZFNKDS-UHFFFAOYSA-N"/>
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182 <brsynth:fba_fraction_shadow_price>
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185 <brsynth:thermo_standard_dg_formation>
186 <brsynth:value value="-1719.970141951422"/>
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210 <brsynth:fba_fraction_shadow_price>
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220 </annotation>
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245 </brsynth:brsynth>
246 </rdf:BRSynth>
247 </rdf:RDF>
248 </annotation>
249 </species>
250 </listOfSpecies>
251 <listOfParameters>
252 <parameter metaid="dc937b59892604f5a86ac96936cd7ff09e25f18ae6b758e8014a24c7fa039e91" sboTerm="SBO:0000625" id="BRS_FBC_10000_0" value="10000" constant="true"/>
253 <parameter metaid="dc937b59892604f5a86ac96936cd7ff09e25f18ae6b758e8014a24c7fa039e91" sboTerm="SBO:0000625" id="BRS_FBC_0_0" value="0" constant="true"/>
254 </listOfParameters>
255 <listOfReactions>
256 <reaction metaid="_7af1776cbbaecbf874d7f576d21891f6ad79e3b7c2e726cfd2ee9f5bd6f483c4" sboTerm="SBO:0000176" id="rxn_1" reversible="false" fast="false" fbc:lowerFluxBound="BRS_FBC_0_0" fbc:upperFluxBound="BRS_FBC_10000_0">
257 <annotation>
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263 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.29"/>
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267 <rdf:BRSynth rdf:about="#_7af1776cbbaecbf874d7f576d21891f6ad79e3b7c2e726cfd2ee9f5bd6f483c4">
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270 <brsynth:rp2_transfo_id value="TRS_0_2_740"/>
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275 <brsynth:tmpl_rxn_ids>
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281 <brsynth:selenzy/>
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293 <brsynth:units value="kilojoule / mole"/>
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295 <brsynth:thermo_dGm_prime>
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308 <brsynth:units value="kilojoule / mole"/>
309 </brsynth:thermo_dG>
310 </brsynth:brsynth>
311 </rdf:BRSynth>
312 </rdf:RDF>
313 </annotation>
314 <listOfReactants>
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316 <speciesReference species="MNXM83" stoichiometry="1" constant="true"/>
317 </listOfReactants>
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382 </rdf:RDF>
383 </annotation>
384 <listOfReactants>
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386 </listOfReactants>
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585 </groups:group>
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587 </model>
588 </sbml>