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comparison test-data/rp_002_0021.xml @ 0:e95370d2e5f9 draft

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"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
author tduigou
date Mon, 13 Dec 2021 18:19:24 +0000
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-1:000000000000 0:e95370d2e5f9
1 <?xml version="1.0" encoding="UTF-8"?>
2 <sbml xmlns="http://www.sbml.org/sbml/level3/version1/core" xmlns:groups="http://www.sbml.org/sbml/level3/version1/groups/version1" xmlns:fbc="http://www.sbml.org/sbml/level3/version1/fbc/version2" level="3" version="1" groups:required="false" fbc:required="false">
3 <model metaid="a9cc9409d25c0b3d10c2984625f4f08d3d0504a7022a8542a76d156ea34afa32" id="RP_model_002_0021" name="002_0021" substanceUnits="mole" timeUnits="second" extentUnits="mole" fbc:strict="true">
4 <listOfCompartments>
5 <compartment metaid="_2e7d2c03a9507ae265ecf5b5356885a53393a2029d241394997265a1a25aefc6" sboTerm="SBO:0000290" id="c" name="cytosol" size="1" constant="true">
6 <annotation>
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9 <bqbiol:is>
10 <rdf:Bag>
11 <rdf:li rdf:resource="http://identifiers.org/bigg.compartment/c"/>
12 <rdf:li rdf:resource="http://identifiers.org/bigg.compartment/c_c"/>
13 <rdf:li rdf:resource="http://identifiers.org/metanetx.compartment/MNXC3"/>
14 <rdf:li rdf:resource="http://identifiers.org/seed/c"/>
15 <rdf:li rdf:resource="http://identifiers.org/seed/c0"/>
16 <rdf:li rdf:resource="http://identifiers.org/seed/cytosol"/>
17 <rdf:li rdf:resource="http://identifiers.org/name/cytosol"/>
18 </rdf:Bag>
19 </bqbiol:is>
20 </rdf:Description>
21 </rdf:RDF>
22 </annotation>
23 </compartment>
24 </listOfCompartments>
25 <listOfSpecies>
26 <species metaid="b0098569a07f786a6e9b2294639668cd4ee564dd642a38bdf429c4c6bb560b46" id="CMPD_0000000001" name="CMPD_0000000001" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
27 <annotation>
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37 <brsynth:inchi value="InChI=1S/C40H64/c1-33(2)19-13-23-37(7)27-17-31-39(9)29-15-25-35(5)21-11-12-22-36(6)26-16-30-40(10)32-18-28-38(8)24-14-20-34(3)4/h11-12,19-22,27-30H,13-18,23-26,31-32H2,1-10H3"/>
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45 <brsynth:thermo_standard_dg_formation>
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66 <brsynth:inchikey value="NUHSROFQTUXZQQ-UHFFFAOYSA-N"/>
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93 <brsynth:inchi/>
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95 <brsynth:fba_biomass_shadow_price>
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97 </brsynth:fba_biomass_shadow_price>
98 <brsynth:fba_fraction_shadow_price>
99 <brsynth:value value="None"/>
100 </brsynth:fba_fraction_shadow_price>
101 <brsynth:thermo_standard_dg_formation>
102 <brsynth:value value="-2172.1728715236113"/>
103 <brsynth:units value="kilojoule / mole"/>
104 </brsynth:thermo_standard_dg_formation>
105 </brsynth:brsynth>
106 </rdf:BRSynth>
107 </rdf:RDF>
108 </annotation>
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121 <brsynth:inchi value="InChI=1S/H4O7P2/c1-8(2,3)7-9(4,5)6/h(H2,1,2,3)(H2,4,5,6)"/>
122 <brsynth:inchikey value="XPPKVPWEQAFLFU-UHFFFAOYSA-N"/>
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129 <brsynth:thermo_standard_dg_formation>
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131 <brsynth:units value="kilojoule / mole"/>
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149 <brsynth:inchi value="InChI=1S/C40H56/c1-33(2)19-13-23-37(7)27-17-31-39(9)29-15-25-35(5)21-11-12-22-36(6)26-16-30-40(10)32-18-28-38(8)24-14-20-34(3)4/h11-12,15-22,25-32H,13-14,23-24H2,1-10H3"/>
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154 <brsynth:fba_fraction_shadow_price>
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157 <brsynth:thermo_standard_dg_formation>
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177 <brsynth:inchi/>
178 <brsynth:inchikey/>
179 <brsynth:fba_biomass_shadow_price>
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181 </brsynth:fba_biomass_shadow_price>
182 <brsynth:fba_fraction_shadow_price>
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185 <brsynth:thermo_standard_dg_formation>
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187 <brsynth:units value="kilojoule / mole"/>
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190 </rdf:BRSynth>
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192 </annotation>
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205 <brsynth:inchi value="InChI=1S/C10H20O7P2/c1-9(2)5-4-6-10(3)7-8-16-19(14,15)17-18(11,12)13/h5,7H,4,6,8H2,1-3H3,(H,14,15)(H2,11,12,13)"/>
206 <brsynth:inchikey value="GVVPGTZRZFNKDS-UHFFFAOYSA-N"/>
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210 <brsynth:fba_fraction_shadow_price>
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213 <brsynth:thermo_standard_dg_formation>
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218 </rdf:BRSynth>
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220 </annotation>
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246 </rdf:BRSynth>
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248 </annotation>
249 </species>
250 </listOfSpecies>
251 <listOfParameters>
252 <parameter metaid="dc937b59892604f5a86ac96936cd7ff09e25f18ae6b758e8014a24c7fa039e91" sboTerm="SBO:0000625" id="BRS_FBC_10000_0" value="10000" constant="true"/>
253 <parameter metaid="dc937b59892604f5a86ac96936cd7ff09e25f18ae6b758e8014a24c7fa039e91" sboTerm="SBO:0000625" id="BRS_FBC_0_0" value="0" constant="true"/>
254 </listOfParameters>
255 <listOfReactions>
256 <reaction metaid="_7af1776cbbaecbf874d7f576d21891f6ad79e3b7c2e726cfd2ee9f5bd6f483c4" sboTerm="SBO:0000176" id="rxn_1" reversible="false" fast="false" fbc:lowerFluxBound="BRS_FBC_0_0" fbc:upperFluxBound="BRS_FBC_10000_0">
257 <annotation>
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263 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.29"/>
264 </rdf:Bag>
265 </bqbiol:is>
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267 <rdf:BRSynth rdf:about="#_7af1776cbbaecbf874d7f576d21891f6ad79e3b7c2e726cfd2ee9f5bd6f483c4">
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270 <brsynth:rp2_transfo_id value="TRS_0_2_740"/>
271 <brsynth:rule_ids>
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273 <brsynth:RR-02-6692e4af37fbca2d-14-F/>
274 </brsynth:rule_ids>
275 <brsynth:tmpl_rxn_ids>
276 <brsynth:MNXR132231/>
277 <brsynth:MNXR112683/>
278 </brsynth:tmpl_rxn_ids>
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280 <brsynth:idx_in_path value="1"/>
281 <brsynth:selenzy/>
282 <brsynth:fba_biomass>
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286 <brsynth:fba_fraction>
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288 <brsynth:units value="milimole / gDW / hour"/>
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290 <brsynth:thermo_dG0_prime>
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292 <brsynth:error value="4.6679220722885155"/>
293 <brsynth:units value="kilojoule / mole"/>
294 </brsynth:thermo_dG0_prime>
295 <brsynth:thermo_dGm_prime>
296 <brsynth:value value="-1561.4482045767807"/>
297 <brsynth:error value="4.6679220722885155"/>
298 <brsynth:units value="kilojoule / mole"/>
299 </brsynth:thermo_dGm_prime>
300 <brsynth:thermo_dG_prime>
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302 <brsynth:error value="4.6679220722885155"/>
303 <brsynth:units value="kilojoule / mole"/>
304 </brsynth:thermo_dG_prime>
305 <brsynth:thermo_dG>
306 <brsynth:value value="-1881.1378556154446"/>
307 <brsynth:error value="4.6679220722885155"/>
308 <brsynth:units value="kilojoule / mole"/>
309 </brsynth:thermo_dG>
310 </brsynth:brsynth>
311 </rdf:BRSynth>
312 </rdf:RDF>
313 </annotation>
314 <listOfReactants>
315 <speciesReference species="MNXM100" stoichiometry="1" constant="true"/>
316 <speciesReference species="MNXM83" stoichiometry="1" constant="true"/>
317 </listOfReactants>
318 <listOfProducts>
319 <speciesReference species="CMPD_0000000003" stoichiometry="1" constant="true"/>
320 <speciesReference species="MNXM11" stoichiometry="2" constant="true"/>
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322 </reaction>
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345 <brsynth:MNXR113543/>
346 <brsynth:MNXR118024/>
347 <brsynth:MNXR139549/>
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362 <brsynth:error value="11.000567449695138"/>
363 <brsynth:units value="kilojoule / mole"/>
364 </brsynth:thermo_dG0_prime>
365 <brsynth:thermo_dGm_prime>
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367 <brsynth:error value="11.000567449695138"/>
368 <brsynth:units value="kilojoule / mole"/>
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373 <brsynth:units value="kilojoule / mole"/>
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377 <brsynth:error value="11.000567449695138"/>
378 <brsynth:units value="kilojoule / mole"/>
379 </brsynth:thermo_dG>
380 </brsynth:brsynth>
381 </rdf:BRSynth>
382 </rdf:RDF>
383 </annotation>
384 <listOfReactants>
385 <speciesReference species="CMPD_0000000003" stoichiometry="1" constant="true"/>
386 </listOfReactants>
387 <listOfProducts>
388 <speciesReference species="CMPD_0000000001" stoichiometry="1" constant="true"/>
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445 </rdf:RDF>
446 </annotation>
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450 </listOfReactants>
451 <listOfProducts>
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453 <speciesReference species="TARGET_0000000001" stoichiometry="1" constant="true"/>
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455 </reaction>
456 </listOfReactions>
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526 <groups:member groups:idRef="TARGET_0000000001"/>
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583 <groups:member groups:idRef="MNXM24"/>
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585 </groups:group>
586 </groups:listOfGroups>
587 </model>
588 </sbml>