Mercurial > repos > tduigou > rpranker

comparison test-data/rp_003_0131.xml @ 0:e95370d2e5f9 draft

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"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
author tduigou
date Mon, 13 Dec 2021 18:19:24 +0000
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-1:000000000000 0:e95370d2e5f9
1 <?xml version="1.0" encoding="UTF-8"?>
2 <sbml xmlns="http://www.sbml.org/sbml/level3/version1/core" xmlns:groups="http://www.sbml.org/sbml/level3/version1/groups/version1" xmlns:fbc="http://www.sbml.org/sbml/level3/version1/fbc/version2" level="3" version="1" groups:required="false" fbc:required="false">
3 <model metaid="d5d4a5735e41ff2b063def8c757236e2e1a0f63c1dfee8baf1e79e81ce759172" id="RP_model_003_0131" name="003_0131" substanceUnits="mole" timeUnits="second" extentUnits="mole" fbc:strict="true">
4 <listOfCompartments>
5 <compartment metaid="_2e7d2c03a9507ae265ecf5b5356885a53393a2029d241394997265a1a25aefc6" sboTerm="SBO:0000290" id="c" name="cytosol" size="1" constant="true">
6 <annotation>
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9 <bqbiol:is>
10 <rdf:Bag>
11 <rdf:li rdf:resource="http://identifiers.org/bigg.compartment/c"/>
12 <rdf:li rdf:resource="http://identifiers.org/bigg.compartment/c_c"/>
13 <rdf:li rdf:resource="http://identifiers.org/metanetx.compartment/MNXC3"/>
14 <rdf:li rdf:resource="http://identifiers.org/seed/c"/>
15 <rdf:li rdf:resource="http://identifiers.org/seed/c0"/>
16 <rdf:li rdf:resource="http://identifiers.org/seed/cytosol"/>
17 <rdf:li rdf:resource="http://identifiers.org/name/cytosol"/>
18 </rdf:Bag>
19 </bqbiol:is>
20 </rdf:Description>
21 </rdf:RDF>
22 </annotation>
23 </compartment>
24 </listOfCompartments>
25 <listOfSpecies>
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27 <annotation>
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36 <brsynth:smiles/>
37 <brsynth:inchi/>
38 <brsynth:inchikey/>
39 <brsynth:fba_biomass_shadow_price>
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41 </brsynth:fba_biomass_shadow_price>
42 <brsynth:fba_fraction_shadow_price>
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44 </brsynth:fba_fraction_shadow_price>
45 <brsynth:thermo_standard_dg_formation>
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47 <brsynth:units value="kilojoule / mole"/>
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52 </annotation>
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101 <brsynth:thermo_standard_dg_formation>
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154 <brsynth:fba_fraction_shadow_price>
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157 <brsynth:thermo_standard_dg_formation>
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177 <brsynth:inchi value="InChI=1S/C40H64/c1-33(2)19-13-23-37(7)27-17-31-39(9)29-15-25-35(5)21-11-12-22-36(6)26-16-30-40(10)32-18-28-38(8)24-14-20-34(3)4/h11-12,19-22,27-30H,13-18,23-26,31-32H2,1-10H3"/>
178 <brsynth:inchikey value="YVLPJIGOMTXXLP-UHFFFAOYSA-N"/>
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206 <brsynth:inchikey value="NUHSROFQTUXZQQ-UHFFFAOYSA-N"/>
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210 <brsynth:fba_fraction_shadow_price>
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249 </species>
250 </listOfSpecies>
251 <listOfParameters>
252 <parameter metaid="dc937b59892604f5a86ac96936cd7ff09e25f18ae6b758e8014a24c7fa039e91" sboTerm="SBO:0000625" id="BRS_FBC_10000_0" value="10000" constant="true"/>
253 <parameter metaid="dc937b59892604f5a86ac96936cd7ff09e25f18ae6b758e8014a24c7fa039e91" sboTerm="SBO:0000625" id="BRS_FBC_0_0" value="0" constant="true"/>
254 </listOfParameters>
255 <listOfReactions>
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260 <bqbiol:is>
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263 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.68"/>
264 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.29"/>
265 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1"/>
266 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.-"/>
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268 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.81"/>
269 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.31"/>
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271 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.85"/>
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292 <brsynth:MNXR116653/>
293 <brsynth:MNXR100621/>
294 <brsynth:MNXR99634/>
295 <brsynth:MNXR112069/>
296 <brsynth:MNXR99650/>
297 <brsynth:MNXR109677/>
298 <brsynth:MNXR113141/>
299 <brsynth:MNXR105052/>
300 <brsynth:MNXR109713/>
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305 <brsynth:MNXR112251/>
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309 <brsynth:MNXR139515/>
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341 <brsynth:units value="kilojoule / mole"/>
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343 <brsynth:thermo_dG>
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346 <brsynth:units value="kilojoule / mole"/>
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348 </brsynth:brsynth>
349 </rdf:BRSynth>
350 </rdf:RDF>
351 </annotation>
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355 </listOfReactants>
356 <listOfProducts>
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420 </rdf:RDF>
421 </annotation>
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424 </listOfReactants>
425 <listOfProducts>
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624 </groups:listOfGroups>
625 </model>
626 </sbml>