Mercurial > repos > tduigou > rptools_rpcompletion

comparison rpcompletion.xml @ 2:eeb447ee56e4 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 387d0dd233c1d9948152a2d4af9e69ad10fe1b6a
author tduigou
date Thu, 23 Nov 2023 14:27:10 +0000
parents ae16d7ce27d1
children e59d28e31f88
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1:2178f031773b 2:eeb447ee56e4
20 --max_subpaths_filter '$adv.max_subpaths_filter' 20 --max_subpaths_filter '$adv.max_subpaths_filter'
21 --cache-dir "\${TMPDIR:-.}" 21 --cache-dir "\${TMPDIR:-.}"
22 ]]></command> 22 ]]></command>
23 <inputs> 23 <inputs>
24 <param name="rp2paths_pathways" type="data" format="csv" label="RP2paths pathways" /> 24 <param name="rp2paths_pathways" type="data" format="csv" label="RP2paths pathways" />
25 <param name="rp2paths_compounds" type="data" format="tabular" label="RP2paths compounds" /> 25 <param name="rp2paths_compounds" type="data" format="csv" label="RP2paths compounds" />
26 <param name="rp2_pathways" type="data" format="csv" label="RetroPath2.0 metabolic network" /> 26 <param name="rp2_pathways" type="data" format="csv" label="RetroPath2.0 metabolic network" />
27 <param name="sink" type="data" format="csv" label="Sink from SBML" /> 27 <param name="sink" type="data" format="csv" label="Sink from SBML" />
28 <section name="adv" title="Advanced Options" expanded="false"> 28 <section name="adv" title="Advanced Options" expanded="false">
29 <param argument="max_subpaths_filter" type="integer" value="10" min="1" max="1000" label="Max subpaths generated per pathway" help="Maximal number of subpaths to be created per master pathway." /> 29 <param argument="max_subpaths_filter" type="integer" value="10" min="1" max="1000" label="Max subpaths generated per pathway" help="Maximal number of subpaths to be created per master pathway." />
30 <param argument="upper_flux_bound" type="integer" value="10000" min="-10000" max="10000" label="Upper flux bound" help="Upper flux bound value to be used in outputted SBML models (fbc SBML package) for new reactions created." /> 30 <param argument="upper_flux_bound" type="integer" value="10000" min="-10000" max="10000" label="Upper flux bound" help="Upper flux bound value to be used in outputted SBML models (fbc SBML package) for new reactions created." />